diff --git a/README.md b/README.md index d5a60fe4765ab207bc81ad0f31605ba7c441ddde..dfb5e979ecb3c54fd33bd347ecfdd9d69024728b 100644 --- a/README.md +++ b/README.md @@ -12,7 +12,9 @@ Code contains: | lung_lif_to_png.py | Transforms Leica microscope format into a png | .lif file pr. sample | input_data/raw | | microscopy_analysis.py | Helper functions | image_preprocessing.py | Equalises contrast across images and channels, and computes max. projections | input_data/raw | input_data/maximum_projections and postprocessed_maxProjs +lung_feature_patch_allPatients_singleProtein.py | Single-protein analysis | postprocessed max. projs. | results/..._single +lung_feature_patch_allPatients_twoProtein.py | Two-protein analysis | postprocessed max. projs. | results/..._dropout +lung_feature_patch_allPatients_threeProtein.py | Three-protein analysis | postprocessed max. projs. | results/..._triple - -nogenerate data_corrected_bis, where each 3D scan is stored as a sequence of .png files under a folder with 'frame' as prefix. +Code developed by Monica J. Emerson monj@dtu.dk with contributions from Anders B. Dahl abda@dtu.dk.