From 7d4ed1cedb2128098ebdebfc111381b8801933b0 Mon Sep 17 00:00:00 2001
From: monj <monj@dtu.dk>
Date: Wed, 29 Sep 2021 15:55:08 +0200
Subject: [PATCH] Update README.md

---
 README.md | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/README.md b/README.md
index 0d9df4b..f6448ec 100644
--- a/README.md
+++ b/README.md
@@ -1,12 +1,14 @@
 # Feature statistics
 
-To be edited
+To reproduce the results from out paper (link to come), you will need to clone this repository or download it as a .zip file. Then, download the input_data and results_justDictionaries folders from DTU Data at XX. Place both within the Lung_ECM folder, besides the code folder. Rename 'results_justDictionaries' to 'results' so as to reproduce the exact results from our paper. Under the same DTU Data link you will also find the complete set of results under 'results_complete'.
+
+The following figure is a schematic view of the code, results and input_data folders. The table below describes further the content of the code folder found in this repository.
 
 Code contains:
 
 | File name | Description | Input | Output |
 | --------- | ----------- | ----- | ------ |
-| lung_to_lif.py | Used to transform data acquired with a Leica microscope into a format we can work with | EDIT | data_corrected_bis | 
+| lung_to_lif.py | Used to transform data acquired with a Leica microscope into a format we can work with | EDIT | input_data/raw | 
 
 
-nogenerate data_corrected_bis, where each 3D scan is stored as a sequence of .png files under a folder with 'frame' as prefix.
\ No newline at end of file
+nogenerate data_corrected_bis, where each 3D scan is stored as a sequence of .png files under a folder with 'frame' as prefix.
-- 
GitLab