diff --git a/reconstruction/check_sinogram.ipynb b/reconstruction/check_sinogram.ipynb new file mode 100644 index 0000000000000000000000000000000000000000..2c0d9ef0d2e5a31a693e745cf6b0b08bf8919e13 --- /dev/null +++ b/reconstruction/check_sinogram.ipynb @@ -0,0 +1,105 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "id": "f79ab52a", + "metadata": {}, + "source": [ + "# Simple sinogram check\n", + "author: Felipe Delestro (fima@dtu.dk)" + ] + }, + { + "cell_type": "code", + "execution_count": 1, + "id": "b5096870", + "metadata": {}, + "outputs": [], + "source": [ + "import qim3d\n", + "import matplotlib.pyplot as plt\n", + "import ipywidgets" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "id": "6b9a1f66", + "metadata": {}, + "outputs": [], + "source": [ + "vol = qim3d.io.load(\"../resources/img3d/small_foram.h5\", dataset_name=\"exchange/data\")" + ] + }, + { + "cell_type": "code", + "execution_count": 46, + "id": "99832d5a", + "metadata": {}, + "outputs": [], + "source": [ + "def plot_sinogram(vol, zpos, ypos):\n", + " fig, axs = plt.subplots(nrows=1, ncols=2, figsize=(8,10), sharey=True)\n", + " \n", + " axs[0].imshow(vol[zpos,:,:])\n", + " axs[0].axhline(ypos, color=\"#FF6633\")\n", + " axs[0].axis(\"off\")\n", + " \n", + " axs[1].imshow(vol[:,ypos,:])\n", + " axs[1].axis(\"off\")\n", + " \n", + " plt.show()" + ] + }, + { + "cell_type": "code", + "execution_count": 47, + "id": "0395e573", + "metadata": {}, + "outputs": [ + { + "data": { + "application/vnd.jupyter.widget-view+json": { + "model_id": "b920afa7cc3b47d99cc824b3afad9589", + "version_major": 2, + "version_minor": 0 + }, + "text/plain": [ + "interactive(children=(IntSlider(value=360, description='zpos', max=720), IntSlider(value=130, description='ypo…" + ] + }, + "execution_count": 47, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "ipywidgets.interactive(plot_sinogram,\n", + " vol = ipywidgets.fixed(vol),\n", + " zpos = ipywidgets.IntSlider(min=0, max=vol.shape[0]-1, value=int(vol.shape[0]/2)),\n", + " ypos = ipywidgets.IntSlider(min=0, max=vol.shape[1]-1, value=int(vol.shape[1]/2)))" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3 (ipykernel)", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.10.12" + } + }, + "nbformat": 4, + "nbformat_minor": 5 +} diff --git a/resources/img3d/small_foram.h5 b/resources/img3d/small_foram.h5 new file mode 100644 index 0000000000000000000000000000000000000000..13c38ea1187de4f4e0da3ca29ecc4b70edd57d36 Binary files /dev/null and b/resources/img3d/small_foram.h5 differ