# QIM Notebooks

This repository contains a curated list of Jupyter Notebooks suitable for serveral tasks related to QIM and Image analysis in general. 

# Guidelines

### Header

The first cell of the notebook should follow the pattern:

```
# Title of the notebook
Notebook author: Author name (author@email.dk)

Short paragraph that describes the contents of the Notebook.

## Dependencies
Explain how to install non-standard libraries that are needed for the notebook to run, or point to resources.

## Reference this work
In case the main library used for the notebook is part of a publication, the reference should be inserted here.

```

The reference can be created using the Qim Platform API, that follows this pattern:
`https://platform.qim.dk/qim-api/reference/<doi address>`

For example, accessing the address https://platform.qim.dk/qim-api/reference/10.1109/CVPRW59228.2023.00456 will give you the markdown text for this particular DOI. It can then be easily copied and pasted into the jupyter notebook.

### Location

Notebooks should be placed according to their intended usage. New directories can be suggested, but the current structure is the following:

```
.
├── analysis
│   └── structure_orientation
├── data
├── detection
├── reconstruction
├── resources
│   ├── img2d
│   ├── img3d
│   └── libs
├── segmentation
└── visualization

```

The `resources` directory should not contain Notebooks, but any data that is required for other Notebooks to run. 

Small python libraries can be located in the `libs`directory. And they can be imported by adding the directory to the path:
```
import sys
sys.path.append("../../resources/libs/")

```

# Contributors

Huge thanks to all the contributors of the Notebook Library!


- Aleksandar Lukic
- Christian Kento Rasmussen
- Felipe Delestro
- H. Martin Kjer
- J. Miguel Valverde
- Kumari Pooja
- Oskar Kristoffersen
- Peter Winkel Rasmussen
- Thorbjørn Erik Køppen Christensen
- Vedrana Andersen Dahl
- Viktor Nikitin