QIM3D (Quantitative Imaging in 3D)

QIM is a Python library for 3D quantitative imaging analysis. It provides functionality for handling data, as well as tools for visualization and analysis.

 

Installation

Install using pip:

pip install qim3d

 

Usage

 

Loading Data

To load image data from a file, use qim.io.load()

import qim3d

# Load a TIFF file
vol = qim3d.io.load("path/to/file.tif")

# Load a TIFF file as a virtual stack
vol = qim3d.io.load("path/to/file.tif", virtual_stack=True)

 

GUI Components

QIM provides GUI components for interactive data exploration. The qim3d.gui module contains various classes for visualization and analysis:

import qim3d

app = qim3d.gui.iso3d.Interface()
app.launch()

Graphical interfaces currently available:

• Data exploration tool (qim3d.gui.data_exploration)
• 3D visualization with isosurfaces (qim3d.gui.iso3d)
• Local thickness (qim3d.gui.local_thickness)

 

Contributing

Contributions to QIM are welcome! If you find a bug, have a feature request, or would like to contribute code, please open an issue or submit a pull request.

 

License

This project is licensed under the MIT License.