diff --git a/qim3d/io/__init__.py b/qim3d/io/__init__.py index 23f02d4c4aceff410adf3daf8f615e425fbbb246..db64b581d28e70fbfe6e63ce58d787d862b8fba7 100644 --- a/qim3d/io/__init__.py +++ b/qim3d/io/__init__.py @@ -1,6 +1,6 @@ # from ._sync import Sync # this will be added back after future development -from ._convert import convert -from ._downloader import Downloader from ._loading import load, load_mesh -from ._ome_zarr import export_ome_zarr, import_ome_zarr +from ._downloader import Downloader from ._saving import save, save_mesh +from ._convert import convert +from ._ome_zarr import export_ome_zarr, import_ome_zarr diff --git a/qim3d/io/_convert.py b/qim3d/io/_convert.py index 49d2633fcbe9df3676b4e9f79f3d8d34383f4d1b..fbfe75a9b9425246dedbd05198b61181a8c84f1a 100644 --- a/qim3d/io/_convert.py +++ b/qim3d/io/_convert.py @@ -7,9 +7,10 @@ import numpy as np import tifffile as tiff import zarr import zarr.core +import qim3d + from tqdm import tqdm -from qim3d.io import save from qim3d.utils._misc import stringify_path @@ -121,7 +122,7 @@ class Convert: """ z = zarr.open(zarr_path) - save(tif_path, z) + qim3d.io.save(tif_path, z) def convert_nifti_to_zarr(self, nifti_path: str, zarr_path: str) -> zarr.core.Array: """ @@ -173,7 +174,7 @@ class Convert: """ z = zarr.open(zarr_path) - save(nifti_path, z, compression=compression) + qim3d.io.save(nifti_path, z, compression=compression) def convert(