From 0659c34ae3491af6afffdc8c854bd60f8cf2366e Mon Sep 17 00:00:00 2001
From: s212246 <s212246@student.dtu.dk>
Date: Mon, 24 Feb 2025 11:27:25 +0100
Subject: [PATCH] Tifffile imagecodecs
---
requirements.txt | 4 +--
setup.py | 75 +++++++++++++++++++++++++-----------------------
2 files changed, 41 insertions(+), 38 deletions(-)
diff --git a/requirements.txt b/requirements.txt
index 320d02f3..7ec31e7c 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -12,8 +12,8 @@ scipy>=1.11.2
seaborn>=0.12.2
pydicom==2.4.4
setuptools>=68.0.0
-imagecodecs==2023.7.10
-tifffile==2023.8.12
+imagecodecs>=2024.12.30
+tifffile>=2025.1.10
torch>=2.0.1
torchvision>=0.15.2
torchinfo>=1.8.0
diff --git a/setup.py b/setup.py
index 9ca17db3..883da55c 100644
--- a/setup.py
+++ b/setup.py
@@ -44,42 +44,45 @@ setup(
],
python_requires='>=3.10',
install_requires=[
- 'gradio==4.44',
- 'h5py>=3.9.0',
- 'localthickness>=0.1.2',
- 'matplotlib>=3.8.0',
- 'pydicom==2.4.4',
- 'numpy>=1.26.0',
- 'outputformat>=0.1.3',
- 'Pillow>=10.0.1',
- 'plotly>=5.14.1',
- 'scipy>=1.11.2',
- 'seaborn>=0.12.2',
- 'setuptools>=68.0.0',
- 'tifffile==2023.8.12',
- 'imagecodecs==2023.7.10',
- 'tqdm>=4.65.0',
- 'nibabel>=5.2.0',
- 'ipywidgets>=8.1.2',
- 'dask>=2023.6.0',
- 'k3d>=2.16.1',
- 'olefile>=0.46',
- 'psutil>=5.9.0',
- 'structure-tensor>=0.2.1',
- 'noise>=1.2.2',
- 'zarr>=2.18.2',
- 'ome_zarr>=0.9.0',
- 'dask-image>=2024.5.3',
- 'scikit-image>=0.24.0',
- 'trimesh>=4.4.9',
+ "gradio==4.44",
+ "h5py>=3.9.0",
+ "localthickness>=0.1.2",
+ "matplotlib>=3.8.0",
+ "pydicom==2.4.4",
+ "numpy>=1.26.0",
+ "outputformat>=0.1.3",
+ "Pillow>=10.0.1",
+ "plotly>=5.14.1",
+ "scipy>=1.11.2",
+ "seaborn>=0.12.2",
+ "setuptools>=68.0.0",
+ "tifffile>=2025.1.10",
+ "imagecodecs>=2024.12.30",
+ "tqdm>=4.65.0",
+ "nibabel>=5.2.0",
+ "ipywidgets>=8.1.2",
+ "dask>=2023.6.0",
+ "k3d>=2.16.1",
+ "olefile>=0.46",
+ "psutil>=5.9.0",
+ "structure-tensor>=0.2.1",
+ "noise>=1.2.2",
+ "zarr>=2.18.2",
+ "ome_zarr>=0.9.0",
+ "dask-image>=2024.5.3",
+ "scikit-image>=0.24.0",
+ "trimesh>=4.4.9"
],
extras_require={
- 'deep-learning': [
- 'albumentations>=1.3.1',
- 'torch>=2.0.1',
- 'torchvision>=0.15.2',
- 'torchinfo>=1.8.0',
- 'monai>=1.2.0',
- ]
- },
+ "deep-learning": [
+ "albumentations>=1.3.1",
+ "torch>=2.0.1",
+ "torchvision>=0.15.2",
+ "torchinfo>=1.8.0",
+ "monai>=1.2.0",
+ ],
+ 'test': [
+ 'testbook>=0.4.2'
+ ]
+}
)
--
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