diff --git a/docs/generate.md b/docs/generate.md index fef26fe50f0381bfffd871e32c2d564e298cb6d4..fb74f1f8fbc5e167f9291808fa4e49c3207d106d 100644 --- a/docs/generate.md +++ b/docs/generate.md @@ -5,5 +5,5 @@ The `qim3d` library provides a set of methods for generating volumes consisting ::: qim3d.generate options: members: - - blob - - collection + - noise_object + - noise_object_collection diff --git a/docs/models.md b/docs/models.md index 17d5367551887b589cf1bdb837df019d1a65eeef..5e058b8eac5f8e435d8357153b5979824537ae64 100644 --- a/docs/models.md +++ b/docs/models.md @@ -2,4 +2,4 @@ The `qim3d` library aims to ease the creation of ML models for volumetric images -::: qim3d.models.unet \ No newline at end of file +::: qim3d.ml.models._unet \ No newline at end of file diff --git a/docs/processing.md b/docs/processing.md index 759c981c8bb76130ac8a850fa72dfa8ece9a535b..3755e84063de755be4f85c6548600725fb846d30 100644 --- a/docs/processing.md +++ b/docs/processing.md @@ -5,33 +5,45 @@ Here, we provide functionalities designed specifically for 3D image analysis and ::: qim3d.processing options: members: - - blob_detection - structure_tensor - local_thickness - - get_3d_cc - - gaussian - - median - - maximum - - minimum - - tophat - get_lines - segment_layers - - create_mesh -::: qim3d.processing.Pipeline +::: qim3d.mesh options: members: - - append + - from_volume -::: qim3d.processing.operations +::: qim3d.detection + options: + members: + - blobs + +::: qim3d.operations options: members: - remove_background - - watershed - fade_mask - overlay_rgb_images -::: qim3d.processing.features +::: qim3d.segmentation + options: + members: + - watershed + - get_3d_cc + +::: qim3d.filters + options: + members: + - gaussian + - median + - maximum + - minimum + - tophat + - Pipeline + +::: qim3d.features options: members: - area diff --git a/docs/utils.md b/docs/utils.md index ffb14315c328cf28df8160869353b3e18971f9d3..3becb903d07477d8b310bfb201aa842d47c17334 100644 --- a/docs/utils.md +++ b/docs/utils.md @@ -2,7 +2,7 @@ A set of tools to ease managment of the system, with the common needs for large data in mind. -::: qim3d.utils.system +::: qim3d.utils options: members: - Memory \ No newline at end of file diff --git a/docs/viz.md b/docs/viz.md index 8b6788b60610d4eee757505ca28bdac5b8691572..c538608987668f683db7b0a2f10db41bdf937836 100644 --- a/docs/viz.md +++ b/docs/viz.md @@ -5,21 +5,22 @@ The `qim3d` library aims to provide easy ways to explore and get insights from v options: members: - histogram - - slices - slicer - - orthogonal - - vol + - slices_grid + - slicer_orthogonal + - circles - chunks - itk_vtk + - volumetric - mesh - local_thickness - vectors - plot_cc - colormaps - - interactive_fade_mask + - fade_mask ::: qim3d.viz.colormaps options: members: - - objects - - qim + - segmentation + - qim \ No newline at end of file