From ee5fc72395aab1b3012679dfd3cbdcc51d2d4913 Mon Sep 17 00:00:00 2001
From: Alessia Saccardo <s212246@dtu.dk>
Date: Tue, 10 Dec 2024 09:19:20 +0100
Subject: [PATCH] Start to add histogram
---
qim3d/viz/explore.py | 16 +++++++++-------
1 file changed, 9 insertions(+), 7 deletions(-)
diff --git a/qim3d/viz/explore.py b/qim3d/viz/explore.py
index be7bc543..12f49fcb 100644
--- a/qim3d/viz/explore.py
+++ b/qim3d/viz/explore.py
@@ -846,7 +846,7 @@ def threshold(
# Create the interactive widget
def _slicer(position, threshold, method):
- fig, axes = plt.subplots(1, 3, figsize=(9, 3))
+ fig, axes = plt.subplots(1, 4, figsize=(9, 3))
slice_img = volume[position, :, :]
# If vmin is higher than the highest value in the image ValueError is raised
@@ -866,6 +866,8 @@ def threshold(
axes[0].set_title('Original')
axes[0].axis('off')
+
+
if method == 'Manual':
threshold_slider.disabled = False
else:
@@ -882,9 +884,9 @@ def threshold(
mask = slice_img > threshold
- axes[1].imshow(mask, cmap=cmap_threshold)
- axes[1].set_title('Binary mask')
- axes[1].axis('off')
+ axes[2].imshow(mask, cmap=cmap_threshold)
+ axes[2].set_title('Binary mask')
+ axes[2].axis('off')
masked_volume = qim3d.processing.operations.overlay_rgb_images(
background = slice_img,
@@ -902,9 +904,9 @@ def threshold(
if (isinstance(vmax, (float, int)) and vmax < np.min(masked_volume))
else vmax
)
- axes[2].imshow(masked_volume, cmap=cmap_threshold, vmin=new_vmin, vmax=new_vmax)
- axes[2].set_title('Overlay')
- axes[2].axis('off')
+ axes[3].imshow(masked_volume, cmap=cmap_threshold, vmin=new_vmin, vmax=new_vmax)
+ axes[3].set_title('Overlay')
+ axes[3].axis('off')
return fig
--
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