import os import re from setuptools import find_packages, setup # Read the contents of your README file with open('README.md', encoding='utf-8') as f: long_description = f.read() # Read the version from the __init__.py file def read_version(): with open(os.path.join('qim3d', '__init__.py'), encoding='utf-8') as f: version_file = f.read() version_match = re.search(r'^__version__ = ["\']([^"\']*)["\']', version_file, re.M) if version_match: return version_match.group(1) raise RuntimeError('Unable to find version string.') setup( name='qim3d', version=read_version(), author='Felipe Delestro', author_email='fima@dtu.dk', description='QIM tools and user interfaces for volumetric imaging', long_description=long_description, long_description_content_type='text/markdown', url='https://platform.qim.dk/qim3d', packages=find_packages(), include_package_data=True, entry_points={'console_scripts': ['qim3d=qim3d.cli:main']}, classifiers=[ 'License :: OSI Approved :: MIT License', 'Programming Language :: Python :: 3', 'Development Status :: 5 - Production/Stable', 'Intended Audience :: Education', 'Intended Audience :: Science/Research', 'Natural Language :: English', 'Operating System :: OS Independent', 'Topic :: Scientific/Engineering :: Image Processing', 'Topic :: Scientific/Engineering :: Visualization', 'Topic :: Software Development :: User Interfaces', ], python_requires='>=3.10', install_requires=[ 'gradio==4.44', 'h5py>=3.9.0', 'localthickness>=0.1.2', 'matplotlib>=3.8.0', 'pydicom==2.4.4', 'numpy>=1.26.0', 'outputformat>=0.1.3', 'Pillow>=10.0.1', 'plotly>=5.14.1', 'scipy>=1.11.2', 'seaborn>=0.12.2', 'setuptools>=68.0.0', 'tifffile==2023.8.12', 'imagecodecs==2023.7.10', 'tqdm>=4.65.0', 'nibabel>=5.2.0', 'ipywidgets>=8.1.2', 'dask>=2023.6.0', 'k3d>=2.16.1', 'olefile>=0.46', 'psutil>=5.9.0', 'structure-tensor>=0.2.1', 'noise>=1.2.2', 'zarr>=2.18.2', 'ome_zarr>=0.9.0', 'dask-image>=2024.5.3', 'scikit-image>=0.24.0', 'trimesh>=4.4.9', ], extras_require={ 'deep-learning': [ 'albumentations>=1.3.1', 'torch>=2.0.1', 'torchvision>=0.15.2', 'torchinfo>=1.8.0', 'monai>=1.2.0', ] }, )