From bebcfe337547011224324cbbf572b2f88a415906 Mon Sep 17 00:00:00 2001
From: patmjen <patmjen@dtu.dk>
Date: Thu, 3 Nov 2022 17:04:56 +0100
Subject: [PATCH] Update Python version for guide
---
HPC_Python_Guide.md | 32 ++++++++++++++++++--------------
1 file changed, 18 insertions(+), 14 deletions(-)
diff --git a/HPC_Python_Guide.md b/HPC_Python_Guide.md
index 9e46750..3924b7a 100644
--- a/HPC_Python_Guide.md
+++ b/HPC_Python_Guide.md
@@ -29,13 +29,15 @@ a100sh
2. Load modules for Python by entering:
```
- module load python3/3.8.9
- module load numpy/1.19.5-python-3.8.9-openblas-0.3.13
- module load scipy/1.5.4-python-3.8.9
- module load cuda/11.0
+ module load python3/3.9.14
+ module load numpy/1.23.3-python-3.9.14-openblas-0.3.21
+ module load scipy/1.9.1-python-3.9.14
+ module load matplotlib/3.6.0-numpy-1.23.3-python-3.9.14
+ module load cuda/11.6
```
- We load `numpy` and `scipy` as modules, since the HPC team have made optimized versions for the HPC cluster.
- NOTE: this uses Python 3.8 but others are available.
+ We load `numpy`, `scipy`, and `matplotlib` as modules, because the HPC team have made optimized versions for the HPC cluster.
+
+ > __NOTE:__ This guide uses Python 3.9 and CUDA 11.6 but other versions are available.
3. Create a virtualenv by running:
```
@@ -62,10 +64,11 @@ You should now be able to install packages with pip install <PACKAGE> as normal.
2. Load modules for Python by entering:
```
- module load python3/3.8.9
- module load numpy/1.19.5-python-3.8.9-openblas-0.3.13
- module load scipy/1.5.4-python-3.8.9
- module load cuda/11.0
+ module load python3/3.9.14
+ module load numpy/1.23.3-python-3.9.14-openblas-0.3.21
+ module load scipy/1.9.1-python-3.9.14
+ module load matplotlib/3.6.0-numpy-1.23.3-python-3.9.14
+ module load cuda/11.6
```
We load `numpy` and `scipy` as modules, since the HPC team have made optimized versions for the HPC cluster.
@@ -77,10 +80,11 @@ You should now be able to install packages with pip install <PACKAGE> as normal.
> __Pro tip:__ To make life easy, put these commands in a bash script called `init.sh`:
> ```
> #!/bin/bash
-> module load python3/3.8.9
-> module load numpy/1.19.5-python-3.8.9-openblas-0.3.13
-> module load scipy/1.5.4-python-3.8.9
-> module load cuda/11.0
+> module load python3/3.9.14
+> module load numpy/1.23.3-python-3.9.14-openblas-0.3.21
+> module load scipy/1.9.1-python-3.9.14
+> module load matplotlib/3.6.0-numpy-1.23.3-python-3.9.14
+> module load cuda/11.6
>
> source <VENV_NAME>/bin/activate
> ```
--
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