Skip to content
Snippets Groups Projects
Select Git revision
  • 85014a4b5a8adc29ceef1e7b1f614b8b6ed9f78b
  • main default protected
  • 3D_UNet
  • notebooksv1
  • scaleZYX_mean
  • notebooks
  • convert_tiff_folders
  • test
  • notebook_update
  • threshold-exploration
  • optimize_scaleZYXdask
  • layered_surface_segmentation
  • conv_zarr_tiff_folders
  • 3d_watershed
  • tr_val_te_splits
  • save_files_function
  • memmap_txrm
  • v0.4.1
  • v0.4.0
  • v0.3.9
  • v0.3.3
  • v0.3.2
  • v0.3.1
  • v0.3.0
  • v0.2.0
25 results

setup.py

Blame
  • Code owners
    Assign users and groups as approvers for specific file changes. Learn more.
    setup.py 2.51 KiB
    import os
    import re
    from setuptools import find_packages, setup
    
    # Read the contents of your README file
    with open("README.md", "r", encoding="utf-8") as f:
        long_description = f.read()
    
    # Read the version from the __init__.py file
    def read_version():
        with open(os.path.join("qim3d", "__init__.py"), "r", encoding="utf-8") as f:
            version_file = f.read()
        version_match = re.search(r'^__version__ = ["\']([^"\']*)["\']', version_file, re.M)
        if version_match:
            return version_match.group(1)
        raise RuntimeError("Unable to find version string.")
    
    setup(
        name="qim3d",
        version=read_version(),
        author="Felipe Delestro",
        author_email="fima@dtu.dk",
        description="QIM tools and user interfaces for volumetric imaging",
        long_description=long_description,
        long_description_content_type="text/markdown",
        url="https://platform.qim.dk/qim3d",
        packages=find_packages(),
        include_package_data=True,
        entry_points = {
            'console_scripts': [
                'qim3d=qim3d.cli:main'
            ]
        },
        classifiers=[
            "License :: OSI Approved :: MIT License",
            "Programming Language :: Python :: 3",
            "Development Status :: 4 - Beta",
            "Intended Audience :: Education",
            "Intended Audience :: Science/Research",
            "Natural Language :: English",
            "Operating System :: OS Independent",
            "Topic :: Scientific/Engineering :: Image Processing",
            "Topic :: Scientific/Engineering :: Visualization",
            "Topic :: Software Development :: User Interfaces",
        ],
        python_requires=">=3.10",
        install_requires=[
            "gradio>=4.27.0",
            "h5py>=3.9.0",
            "localthickness>=0.1.2",
            "matplotlib>=3.8.0",
            "pydicom>=2.4.4",
            "numpy>=1.26.0",
            "outputformat>=0.1.3",
            "Pillow>=10.0.1",
            "plotly>=5.14.1",
            "scipy>=1.11.2",
            "seaborn>=0.12.2",
            "setuptools>=68.0.0",
            "tifffile>=2023.4.12",
            "tqdm>=4.65.0",
            "nibabel>=5.2.0",
            "ipywidgets>=8.1.2",
            "dask>=2023.6.0",
            "k3d>=2.16.1",
            "olefile>=0.46",
            "psutil>=5.9.0",
            "structure-tensor>=0.2.1",
            "noise>=1.2.2",
            "zarr>=2.18.2",
            "ome_zarr>=0.9.0",
            "dask-image>=2024.5.3",
            "scikit-image>=0.24.0",
            "trimesh>=4.4.9"
        ],
        extras_require={
        "deep-learning": [
            "albumentations>=1.3.1",
            "torch>=2.0.1",
            "torchvision>=0.15.2",
            "torchinfo>=1.8.0",
            "monai>=1.2.0",
        ]
    }
    )