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setup.py 2.51 KiB
import os
import re
from setuptools import find_packages, setup
# Read the contents of your README file
with open("README.md", "r", encoding="utf-8") as f:
long_description = f.read()
# Read the version from the __init__.py file
def read_version():
with open(os.path.join("qim3d", "__init__.py"), "r", encoding="utf-8") as f:
version_file = f.read()
version_match = re.search(r'^__version__ = ["\']([^"\']*)["\']', version_file, re.M)
if version_match:
return version_match.group(1)
raise RuntimeError("Unable to find version string.")
setup(
name="qim3d",
version=read_version(),
author="Felipe Delestro",
author_email="fima@dtu.dk",
description="QIM tools and user interfaces for volumetric imaging",
long_description=long_description,
long_description_content_type="text/markdown",
url="https://platform.qim.dk/qim3d",
packages=find_packages(),
include_package_data=True,
entry_points = {
'console_scripts': [
'qim3d=qim3d.cli:main'
]
},
classifiers=[
"License :: OSI Approved :: MIT License",
"Programming Language :: Python :: 3",
"Development Status :: 4 - Beta",
"Intended Audience :: Education",
"Intended Audience :: Science/Research",
"Natural Language :: English",
"Operating System :: OS Independent",
"Topic :: Scientific/Engineering :: Image Processing",
"Topic :: Scientific/Engineering :: Visualization",
"Topic :: Software Development :: User Interfaces",
],
python_requires=">=3.10",
install_requires=[
"gradio>=4.27.0",
"h5py>=3.9.0",
"localthickness>=0.1.2",
"matplotlib>=3.8.0",
"pydicom>=2.4.4",
"numpy>=1.26.0",
"outputformat>=0.1.3",
"Pillow>=10.0.1",
"plotly>=5.14.1",
"scipy>=1.11.2",
"seaborn>=0.12.2",
"setuptools>=68.0.0",
"tifffile>=2023.4.12",
"tqdm>=4.65.0",
"nibabel>=5.2.0",
"ipywidgets>=8.1.2",
"dask>=2023.6.0",
"k3d>=2.16.1",
"olefile>=0.46",
"psutil>=5.9.0",
"structure-tensor>=0.2.1",
"noise>=1.2.2",
"zarr>=2.18.2",
"ome_zarr>=0.9.0",
"dask-image>=2024.5.3",
"scikit-image>=0.24.0",
"trimesh>=4.4.9"
],
extras_require={
"deep-learning": [
"albumentations>=1.3.1",
"torch>=2.0.1",
"torchvision>=0.15.2",
"torchinfo>=1.8.0",
"monai>=1.2.0",
]
}
)