Setup for v0.3.0

README.md

@@ -62,6 +62,11 @@ app = qim3d.gui.iso3d.Interface()
 app.launch()
 ```
 
+GUIs can also be launched using the Qim3D CLI:
+```
+$ qim3d gui --data-explorer
+```
+
 # Contributing
 Contributions to `qim3d` are welcome! If you find a bug, have a feature request, or would like to contribute code, please open an issue or submit a pull request.
 

qim3d/gui/data_explorer.py

@@ -43,12 +43,12 @@ class Interface:
 
         # In case we have a directory
         if os.path.isdir(new_path):
-            return gr.update(root=new_path, label=new_path)
+            return gr.update(root_dir=new_path, label=new_path)
 
         elif os.path.isfile(new_path):
             parent_dir = os.path.dirname(new_path)
             file_name = str(os.path.basename(new_path))
-            return gr.update(root=parent_dir, label=parent_dir, value=file_name)
+            return gr.update(root_dir=parent_dir, label=parent_dir, value=file_name)
 
         else:
             raise ValueError("Invalid path")
@@ -102,7 +102,7 @@ class Interface:
                             )
                     explorer = gr.FileExplorer(
                         glob="{*/,}{*.*}",
-                        root=os.getcwd(),
+                        root_dir=os.getcwd(),
                         label=os.getcwd(),
                         render=True,
                         file_count="single",

requirements.txt

-albumentations>=1.3.1
-gradio>=3.44.3
-h5py>=3.9.0
-localthickness>=0.1.2
-matplotlib>=3.7.1
-monai>=1.2.0
-numpy>=1.25.2
-outputformat>=0.1.3
-Pillow>=10.0.1
-plotly>=5.14.1
-scipy>=1.11.2
-seaborn>=0.12.2
-setuptools>=68.0.0
-tifffile>=2023.4.12
-torch>=2.0.1
-torchvision>=0.15.2
-torchinfo>=1.8.0
-tqdm>=4.65.0
+albumentations>=1.3.1,
+gradio>=4.15.0,
+h5py>=3.9.0,
+localthickness>=0.1.2,
+matplotlib>=3.8.0,
+monai>=1.2.0,
+numpy>=1.26.0,
+outputformat>=0.1.3,
+Pillow>=10.0.1,
+plotly>=5.14.1,
+scipy>=1.11.2,
+seaborn>=0.12.2,
+setuptools>=68.0.0,
+tifffile>=2023.4.12,
+torch>=2.0.1,
+torchvision>=0.15.2,
+torchinfo>=1.8.0,
+tqdm>=4.65.0,
+nibabel>=5.2.0

setup.py

@@ -9,7 +9,7 @@ with open("README.md", "r", encoding="utf-8") as f:
 
 setup(
     name="qim3d",
-    version="0.2.0",
+    version="0.3.0",
     author="Felipe Delestro",
     author_email="fima@dtu.dk",
     description="QIM tools and user interfaces",
@@ -26,7 +26,7 @@ setup(
     classifiers=[
         "License :: OSI Approved :: MIT License",
         "Programming Language :: Python :: 3",
-        "Development Status :: 2 - Pre-Alpha",
+        "Development Status :: 4 - Beta",
         "Intended Audience :: Education",
         "Intended Audience :: Science/Research",
         "Natural Language :: English",
@@ -35,15 +35,15 @@ setup(
         "Topic :: Scientific/Engineering :: Visualization",
         "Topic :: Software Development :: User Interfaces",
     ],
-    python_requires=">=3.6",
+    python_requires=">=3.10",
     install_requires=[
         "albumentations>=1.3.1",
-        "gradio>=3.44.3",
+        "gradio>=4.15.0",
         "h5py>=3.9.0",
         "localthickness>=0.1.2",
-        "matplotlib>=3.7.1",
+        "matplotlib>=3.8.0",
         "monai>=1.2.0",
-        "numpy>=1.25.2",
+        "numpy>=1.26.0",
         "outputformat>=0.1.3",
         "Pillow>=10.0.1",
         "plotly>=5.14.1",
@@ -55,5 +55,6 @@ setup(
         "torchvision>=0.15.2",
         "torchinfo>=1.8.0",
         "tqdm>=4.65.0",
+        "nibabel>=5.2.0"
     ],
 )