Changed blob_detection, filters, logging

1de34fd0 · s214735 · 9171f5a9 · 1de34fd0 · 1de34fd0 · 1de34fd0
Commit 1de34fd0 authored 5 months ago by s214735
--- a/docs/notebooks/Logging.ipynb
+++ b/docs/notebooks/Logging.ipynb
@@ -5,7 +5,7 @@
   "id": "ae2a75fe",
   "metadata": {},
   "source": [
-    "# Logging system for qim3d\n",
+    "# Logging system for qim3d (FOR INTERNAL USE)\n",
    "\n",
    "Using proper logging instead of print statements is a recommended practice.\n",
    "\n",
@@ -198,7 +198,7 @@
 ],
 "metadata": {
  "kernelspec": {
-   "display_name": "Python 3 (ipykernel)",
+   "display_name": "qim3d-env",
   "language": "python",
   "name": "python3"
  },
@@ -212,7 +212,7 @@
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
-   "version": "3.10.6"
+   "version": "3.11.10"
  }
 },
 "nbformat": 4,

 %% Cell type:markdown id:ae2a75fe tags:
-# Logging system for qim3d
+# Logging system for qim3d (FOR INTERNAL USE)
 Using proper logging instead of print statements is a recommended practice.
 While print statements can be helpful for quick debugging, logging provides a more powerful and versatile approach. Logging allows for better control over output, with options to configure log levels, filter messages, and redirect output to different destinations.
 %% Cell type:code id:a31b2245 tags:
 ``` python
 import qim3d
 from qim3d.io.logger import log
 ```
 %% Cell type:code id:94022824 tags:
 ``` python
 # Here we test by sending one message for each level
 # Note that DEBUG and INFO do not appear
 log.debug('debug level message')
 log.info('info level message')
 log.warning('warning level message')
 log.error('error level message')
 log.critical('critical level message')
 ```
 %% Output
    warning level message
    error level message
    critical level message
 %% Cell type:code id:b0856333 tags:
 ``` python
 # Change the level to debug
 qim3d.io.logger.level("debug")
 # Now all the levels get logged
 log.debug('debug level message')
 log.info('info level message')
 log.warning('warning level message')
 log.error('error level message')
 log.critical('critical level message')
 ```
 %% Output
    debug level message
    info level message
    warning level message
    error level message
    critical level message
 %% Cell type:code id:eb542404 tags:
 ``` python
 # Change the level to error
 qim3d.io.logger.level("error")
 # And now only above ERROR is shown
 log.debug('debug level message')
 log.info('info level message')
 log.warning('warning level message')
 log.error('error level message')
 log.critical('critical level message')
 ```
 %% Output
    error level message
    critical level message
 %% Cell type:code id:af3cc812 tags:
 ``` python
 # We can increase the level of detail
 qim3d.io.logger.set_detailed_output()
 # Note that DEBUG and INFO are still not shown
 log.debug('debug level message')
 log.info('info level message')
 log.warning('warning level message')
 log.error('error level message')
 log.critical('critical level message')
 ```
 %% Output
    ERROR     3224913348.py:8    error level message
    CRITICAL  3224913348.py:9    critical level message
 %% Cell type:code id:d7239b1b tags:
 ``` python
 # We can switch back to the simple output mode
 qim3d.io.logger.set_simple_output()
 # Now we see all the levels on simple mode
 log.debug('debug level message')
 log.info('info level message')
 log.warning('warning level message')
 log.error('error level message')
 log.critical('critical level message')
 ```
 %% Output
    error level message
    critical level message
 %% Cell type:code id:eaceb5b6 tags:
 ``` python
 # Change back to detailed and DEBUG level
 qim3d.io.logger.set_detailed_output()
 qim3d.io.logger.level("debug")
 log.debug('debug level message')
 log.info('info level message')
 log.warning('warning level message')
 log.error('error level message')
 log.critical('critical level message')
 ```
 %% Output
    DEBUG     1186198911.py:5    debug level message
    INFO      1186198911.py:6    info level message
    WARNING   1186198911.py:7    warning level message
    ERROR     1186198911.py:8    error level message
    CRITICAL  1186198911.py:9    critical level message

--- a/docs/notebooks/References from DOI.ipynb
+++ b/docs/notebooks/References from DOI.ipynb
@@ -423,7 +423,7 @@
 ],
 "metadata": {
  "kernelspec": {
-   "display_name": "Python 3 (ipykernel)",
+   "display_name": "qim3d-env",
   "language": "python",
   "name": "python3"
  },
@@ -437,7 +437,7 @@
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
-   "version": "3.10.11"
+   "version": "3.11.10"
  }
 },
 "nbformat": 4,

--- a/docs/notebooks/blob_detection.ipynb
+++ b/docs/notebooks/blob_detection.ipynb
--- a/docs/notebooks/filters.ipynb
+++ b/docs/notebooks/filters.ipynb