replaced print with log.info

qim3d/gui/data_explorer.py

@@ -3,6 +3,7 @@ import numpy as np
 import os
 from qim3d.tools import internal_tools
 from qim3d.io import DataLoader
+from qim3d import log
 import tifffile
 import outputformat as ouf
 import datetime
@@ -297,7 +298,7 @@ class Pipeline:
         session.vol = DataLoader().load_tiff(session.data_path)
 
         if self.verbose:
-            print(ouf.br(3, return_str=True) + session.summary_str())
+            log.info(ouf.br(3, return_str=True) + session.summary_str())
 
         return session
 

qim3d/gui/iso3d.py

@@ -3,6 +3,7 @@ import numpy as np
 import os
 from qim3d.tools import internal_tools
 from qim3d.io import DataLoader
+from qim3d import log
 import plotly.graph_objects as go
 from scipy import ndimage
 
@@ -54,7 +55,7 @@ class Interface:
         original_Z, original_Y, original_X = np.shape(self.vol)
         max_size = np.max([original_Z, original_Y, original_X])
         if self.verbose:
-            print(f"\nOriginal volume: {original_Z, original_Y, original_X}")
+            log.info(f"\nOriginal volume: {original_Z, original_Y, original_X}")
 
         # Resize for display
         self.vol = ndimage.zoom(
@@ -68,7 +69,7 @@ class Interface:
             self.vol
         )
         if self.verbose:
-            print(
+            log.info(
                 f"Resized volume: {self.display_size_z, self.display_size_y, self.display_size_x}"
             )
 

qim3d/gui/local_thickness.py

@@ -3,6 +3,7 @@ import numpy as np
 import os
 from qim3d.tools import internal_tools
 from qim3d.io import DataLoader
+from qim3d import log
 import tifffile
 import plotly.express as px
 from scipy import ndimage
@@ -313,11 +314,11 @@ class Session:
         self.max_size = np.max(self.original_shape)
 
         if self.verbose:
-            print(f"Original volume shape:{self.original_shape}")
-            print(f"Original Z: {self.original_Z}")
-            print(f"Original Y: {self.original_Y}")
-            print(f"Original X: {self.original_X}")
-            print(f"Max size: {self.max_size}")
+            log.info(f"Original volume shape:{self.original_shape}")
+            log.info(f"Original Z: {self.original_Z}")
+            log.info(f"Original Y: {self.original_Y}")
+            log.info(f"Original X: {self.original_X}")
+            log.info(f"Max size: {self.max_size}")
 
 
 class Pipeline: