Added event trigger for removing output file in working directory

qim3d/gui/annotation_tool.py

@@ -170,7 +170,9 @@ class Interface:
                 fn=operations.save_mask,
                 inputs=output_masks,
                 outputs=[save_output, save_output],
-            )
+            ).success(
+                fn=lambda: os.remove('mask.tif')
+                ) # Remove mask file from working directory immediately after sending it to /tmp/gradio
 
             # Update 'Add mask' button interactivit according to the current count
             counts.change(

qim3d/gui/iso3d.py

@@ -187,6 +187,11 @@ class Interface:
 
         return fig, "iso3d.html"
     
+    def remove_unused_file(self):
+        # Remove localthickness.tif file from working directory
+        # as it otherwise is not deleted
+        os.remove("iso3d.html")
+
     def create_interface(self):
         # Create gradio app
 
@@ -367,6 +372,7 @@ class Interface:
             # fmt: off
             btn_run.click(
                 fn=self.process, inputs=inputs, outputs=outputs).success(
+                fn=self.remove_unused_file).success(
                 fn=self.make_visible, inputs=None, outputs=plot_download)
             # fmt: on
 

qim3d/gui/local_thickness.py

@@ -90,7 +90,6 @@ class Interface:
             quiet=quiet,
             height=self.height,
             width=self.width,
-            show_tips=False,
         )
 
         return
@@ -272,6 +271,7 @@ class Interface:
                 fn=pipeline.output_viz, inputs=session, outputs=output_vol).success(
                 fn=pipeline.thickness_histogram, inputs=session, outputs=histogram).success(
                 fn=pipeline.save_lt, inputs=session, outputs=lt_output).success(
+                fn=pipeline.remove_unused_file).success(
                 fn=self.make_visible, inputs=None, outputs=lt_output)
 
 
@@ -421,6 +421,11 @@ class Pipeline:
 
         return filename
     
+    def remove_unused_file(self):
+        # Remove localthickness.tif file from working directory
+        # as it otherwise is not deleted
+        os.remove('localthickness.tif')
+
 def run_interface(host = "0.0.0.0"):
     gradio_interface = Interface().create_interface()
     internal_tools.run_gradio_app(gradio_interface,host)