Local thickness GUI

README.md

-# QIM (Quantitative Imaging Library)
+# QIM (Quantitative Imaging)
 
-QIM is a Python library for quantitative imaging analysis. It provides functionality for loading and saving image data, as well as tools for visualization and analysis.
-
-## Features
-
-- Load image data from TIFF and HDF5 files.
-- GUI components for interactive data exploration.
-- Tools for performing quantitative analysis on image data.
+QIM is a Python library for 3D quantitative imaging analysis. It provides functionality for handling data, as well as tools for visualization and analysis.
 
+ 
 ## Installation
 
-QIM can be installed using pip:
+Install using pip:
 
-```shell
+```bash
 pip install qim
 ```
 
-## Usage
+ 
+# Usage
 
-### Loading Data
-To load image data from a file, use the qim.io.load() function:
+ 
+## Loading Data
+To load image data from a file, use `qim.io.load()`
 
 ```python
 import qim
 
 # Load a TIFF file
-data = qim.io.load("path/to/file.tif")
+vol = qim.io.load("path/to/file.tif")
 
 # Load a TIFF file as a virtual stack
-data = qim.io.load("path/to/file.tif", virtual_stack=True)
+vol = qim.io.load("path/to/file.tif", virtual_stack=True)
 ```
 
-### GUI Components
-QIM provides GUI components for interactive data exploration. The qim.gui module contains various classes for visualization and analysis:
+ 
+## GUI Components
+QIM provides GUI components for interactive data exploration. The `qim.gui` module contains various classes for visualization and analysis:
+
 ```python
 import qim
 
@@ -40,8 +39,16 @@ app = qim.gui.iso3d.Interface()
 app.launch()
 ```
 
+Graphical interfaces currently available:
+- Data exploration tool (`qim.gui.data_exploration`)
+- 3D visualization with isosurfaces (`qim.gui.iso3d`)
+- Local thickness (`qim.gui.local_thickness`)
+
+
+ 
 # Contributing
 Contributions to QIM are welcome! If you find a bug, have a feature request, or would like to contribute code, please open an issue or submit a pull request.
 
+ 
 # License
 This project is licensed under the MIT License.
\ No newline at end of file

qim/css/gradio.css

@@ -18,6 +18,7 @@ h2 {
   border-radius: 0.375rem !important;
   border: 0px !important;
 }
+
 /* Hides Gradio footer */
 footer {
   visibility: hidden;
@@ -52,6 +53,7 @@ footer {
 input[type="number" i] {
   width: 36px !important;
 }
+
 input::-webkit-outer-spin-button,
 input::-webkit-inner-spin-button {
   -webkit-appearance: none;
@@ -74,7 +76,8 @@ input[type="range"] {
 
 
 input[type="range"]::-webkit-slider-thumb {
-  cursor: pointer; /* Cursor on hover */
+  cursor: pointer;
+  /* Cursor on hover */
 }
 
 
@@ -135,6 +138,7 @@ input[type="range"]::-webkit-slider-thumb {
   border-radius: 0.375rem !important;
   font-weight: normal !important;
 }
+
 .btn-run:hover {
   background: #198754 !important;
   border-color: #198754 !important;
@@ -144,6 +148,7 @@ input[type="range"]::-webkit-slider-thumb {
 .btn {
   height: 100% !important;
 }
+
 .btn:active::after {
   content: "";
   position: absolute;
@@ -169,6 +174,7 @@ input[type="range"]::-webkit-slider-thumb {
     transform: rotate(1turn);
   }
 }
+
 .btn-clear {
   background: white !important;
   border-color: #6c757d !important;
@@ -192,6 +198,7 @@ input[type="range"]::-webkit-slider-thumb {
   border-radius: 0.375rem !important;
   font-weight: normal !important;
 }
+
 .gallery-item:hover {
   background: #6c757d !important;
   border-color: #6c757d !important;
@@ -254,9 +261,15 @@ div.svelte-1frtwj3 {
   height: 320px !important;
 }
 
+.w-320 {
+  width: 320px !important;
+}
+
+
 .h-256 {
   height: 256px !important;
 }
+
 .w-256 {
   width: 256px !important;
 }
@@ -264,6 +277,7 @@ div.svelte-1frtwj3 {
 .h-128 {
   height: 128px !important;
 }
+
 .w-128 {
   width: 128px !important;
 }
@@ -271,6 +285,7 @@ div.svelte-1frtwj3 {
 .h-64 {
   height: 64px !important;
 }
+
 .w-64 {
   width: 64px !important;
 }
@@ -278,6 +293,7 @@ div.svelte-1frtwj3 {
 .h-32 {
   height: 32px !important;
 }
+
 .w-32 {
   width: 32px !important;
 }
@@ -285,6 +301,7 @@ div.svelte-1frtwj3 {
 .h-0 {
   height: 0px !important;
 }
+
 .w-0 {
   width: 0px !important;
 }
\ No newline at end of file