before changing namespace

qim3d/gui/data_explorer.py

@@ -8,7 +8,7 @@ import tifffile
 import outputformat as ouf
 import datetime
 import matplotlib
-matplotlib.use("Agg")
+# matplotlib.use("Agg")
 import matplotlib.pyplot as plt
 
 

qim3d/gui/local_thickness.py

@@ -12,7 +12,7 @@ import plotly.graph_objects as go
 import localthickness as lt
 import matplotlib
 
-matplotlib.use("Agg")
+# matplotlib.use("Agg")
 import matplotlib.pyplot as plt
 
 

qim3d/io/load.py

@@ -51,12 +51,6 @@ class DataLoader:
         Returns:
             numpy.ndarray: The loaded volume as a NumPy array.
 
-        Raises:
-            FileNotFoundError: If the file does not exist.
-
-        Example:
-            loader = DataLoader()
-            data = loader.load_tiff("image.tif")
         """
         if self.virtual_stack:
             log.info("Using virtual stack")
@@ -78,12 +72,6 @@ class DataLoader:
         Returns:
             numpy.ndarray: The loaded volume as a NumPy array.
 
-        Raises:
-            FileNotFoundError: If the file does not exist.
-
-        Example:
-            loader = DataLoader()
-            data = loader.load_h5("data.h5")
         """
         with h5py.File(path, "r") as f:
             vol = f["data"][:]

qim3d/tools/internal_tools.py

@@ -7,7 +7,6 @@ import matplotlib.pyplot as plt
 import matplotlib
 import numpy as np
 
-matplotlib.use("Agg")
 
 
 def mock_plot():
@@ -23,6 +22,10 @@ def mock_plot():
         >>> plt.show()
     """
 
+    # TODO: Check if using Agg backend conflicts with other pipelines
+    
+    matplotlib.use("Agg")
+
     fig = plt.figure(figsize=(5, 4))
     axes = fig.add_axes([0.1, 0.1, 0.8, 0.8])
     values = np.arange(0, 2 * np.pi, 0.01)