Merge

qim3d/__init__.py

+<<<<<<< HEAD
 """qim3d: A Python package for 3D image processing and visualization.
+=======
+import qim3d.io as io
+import qim3d.gui as gui
+import qim3d.viz as viz
+import qim3d.utils as utils
+import qim3d.models as models
+import qim3d.process as process
+import logging
+>>>>>>> 1622d378193877cb85f53b1a05207088b3f3cf0a
 
 The qim3d library is designed to make it easier to work with 3D imaging data in Python. 
 It offers a range of features, including data loading and manipulation,

qim3d/utils/cli.py

+import argparse
+from qim3d.gui import data_explorer, iso3d, annotation_tool, local_thickness, layers2d
+
+def main():
+    parser = argparse.ArgumentParser(description='Qim3d command-line interface.')
+    subparsers = parser.add_subparsers(title='Subcommands', dest='subcommand')
+
+    # subcommands
+    gui_parser = subparsers.add_parser('gui', help = 'Graphical User Interfaces.')
+
+    gui_parser.add_argument('--data-explorer', action='store_true', help='Run data explorer.')
+    gui_parser.add_argument('--iso3d', action='store_true', help='Run iso3d.')
+    gui_parser.add_argument('--annotation-tool', action='store_true', help='Run annotation tool.')
+    gui_parser.add_argument('--local-thickness', action='store_true', help='Run local thickness tool.')
+    gui_parser.add_argument('--layers2d', action='store_true', help='Run layers2d.')
+    gui_parser.add_argument('--host', default='0.0.0.0', help='Desired host.')
+
+    args = parser.parse_args()
+
+    if args.subcommand == 'gui':
+        arghost = args.host
+        if args.data_explorer:
+            
+            data_explorer.run_interface(arghost)
+
+        elif args.iso3d:
+            iso3d.run_interface(arghost)
+        
+        elif args.annotation_tool:
+            annotation_tool.run_interface(arghost)
+        
+        elif args.local_thickness:
+            local_thickness.run_interface(arghost)
+
+        elif args.layers2d:
+            layers2d.run_interface(arghost)
+            
+if __name__ == '__main__':
+    main()
\ No newline at end of file

qim3d/viz/layers2d.py

 """ Provides a collection of visualisation functions for the Layers2d class."""
 import matplotlib.pyplot as plt
 import numpy as np
+<<<<<<< HEAD
 from qim3d.processing import layers2d as l2d
+=======
+from qim3d.process import layers2d as l2d
+>>>>>>> 1622d378193877cb85f53b1a05207088b3f3cf0a
 
 def create_subplot_of_2d_arrays(data, m_rows = 1, n_cols = 1, figsize = None):
     '''