Merge branch 'imports_refactoring' into 'main'

commenting models out

See merge request !94

qim3d/__init__.py

+"""qim3d: A Python package for 3D image processing and visualization.
+
+The qim3d library is designed to make it easier to work with 3D imaging data in Python. 
+It offers a range of features, including data loading and manipulation,
+ image processing and filtering, visualization of 3D data, and analysis of imaging results.
+
+Documentation available at https://platform.qim.dk/qim3d/
+
+"""
+
+__version__ = "0.3.6"
+
 import logging
 
 logging.basicConfig(level=logging.ERROR)
@@ -5,12 +17,11 @@ logging.basicConfig(level=logging.ERROR)
 from . import io
 from . import gui
 from . import viz
-
 from . import utils
-from . import models
 from . import processing
 
+# Commenting out models because it takes too long to import
+# from . import models
 
-__version__ = "0.3.5"
 examples = io.ImgExamples()
 io.logger.set_level_info()

qim3d/io/loading.py

@@ -31,7 +31,7 @@ from qim3d.io.logger import log
 from qim3d.utils.internal_tools import get_file_size, sizeof, stringify_path
 from qim3d.utils.system import Memory
 
-dask.config.set(scheduler="processes")  # Dask parallel goes brrrrr
+dask.config.set(scheduler="processes") 
 
 
 class DataLoader:

qim3d/utils/cli.py

 import argparse
 import webbrowser
 
-import qim3d
 from qim3d.gui import annotation_tool, data_explorer, iso3d, local_thickness
 from qim3d.io.loading import DataLoader
 from qim3d.utils import image_preview
+from qim3d import __version__ as version
+import qim3d
 
 
 def main():
@@ -150,7 +151,7 @@ def main():
             "--- Welcome to qim3d command-line interface ---\n"
             "qim3d is a Python package for 3D image processing and visualization.\n"
             "For more information, please visit: https://platform.qim.dk/qim3d/\n"
-            f"Current version of qim3d: {qim3d.__version__}\n"
+            f"Current version of qim3d: {version}\n"
             " \n"
             "The qim3d command-line interface provides the following subcommands:\n"
             "- gui: Graphical User Interfaces\n"

qim3d/viz/__init__.py

-#from .colormaps import objects
 from . import colormaps
 from .cc import plot_cc
 from .detection import circles

qim3d/viz/colormaps.py

@@ -10,8 +10,6 @@ from matplotlib.colors import LinearSegmentedColormap
 from matplotlib import colormaps
 from skimage import color
 
-from qim3d.io.logger import log
-
 def rearrange_colors(randRGBcolors_old, min_dist = 0.5):
     # Create new list for re-arranged colors
     randRGBcolors_new = [randRGBcolors_old.pop(0)]

setup.py

@@ -9,7 +9,7 @@ with open("README.md", "r", encoding="utf-8") as f:
 
 setup(
     name="qim3d",
-    version="0.3.5",
+    version="0.3.6",
     author="Felipe Delestro",
     author_email="fima@dtu.dk",
     description="QIM tools and user interfaces",