Synthetic collection generation

Refactoring of synthetic blob generation

• Created new generate module in library and corresponding page in the documentation
• Moved generate_volume function from qim3d/utils/img.py to qim3d/generate/blob_.py, and re-named function to blob
• Moved overlay_rgb_images function from qim3d/utils/img.py to qim3d/processing/operations.py
• Optimized qim3d.generate.blob function with vectorized approach for faster computations
• Added auto_clip boolean parameter for allowing automatic threshold computation to ensure blobs without straight cuts

Implementation of synthetic collection generation

• Created new collection function in the generate module (qim3d/generate/collection_.py), and corresponding page in the documentation
• The collection function generates and returns a 3D volume with a collection of blobs from specified parameter ranges, along with a connected components CC object. Blobs are placed without overlap, and can either be placed randomly or at specific positions within the collection.

requested review from @fima

assigned to @s193396

added 1 commit

• 48bb3763 - Added copy() to the collection, to ensure new arrays

Compare with previous version

added 1 commit

• da9b5858 - Added shape zoom and max rotation

Compare with previous version

added 1 commit

• 86a1cfde - Added labels system to support object fragmentation

Compare with previous version

added 1 commit

• 27f95439 - fine tunning

Compare with previous version

added 1 commit

• 25c79af3 - separated min and max params

Compare with previous version

added 1 commit

• f8e867ee - Changed default values. Also skipping log for structure tensor

Compare with previous version

added 1 commit

• 7138a45c - Updated docs

Compare with previous version

approved this merge request

merged

mentioned in commit ab793d64