New Layered Surface Segmentation (!117) · Merge requests · QIM / Tools / qim3d

Merged s233039 requested to merge new_layered_surface_segmentation into main 9 months ago

Oct 16, 2024
- Added slgbuilder to requirements · 14d7fe7a
  David Grundfest authored 9 months ago
  
  14d7fe7a
Oct 15, 2024
- Merge branch 'main' into new_layered_surface_segm · e5270768
  David Grundfest authored 9 months ago
  
  e5270768
- Fixed image with overlay · cfce3671
  David Grundfest authored 9 months ago
  
  cfce3671
Oct 03, 2024
- Merged with main · 9773a251
  David Grundfest authored 9 months ago
  
  9773a251
- Moved segmentation setting to right panel · 7b69ae58
  David Grundfest authored 9 months ago
  
  7b69ae58
Sep 26, 2024
- Merge · 56a5c210
  David Grundfest authored 9 months ago
  
  56a5c210
- Axes swap to follow YZX notation · fecd3ec6
  David Grundfest authored 9 months ago
  
  fecd3ec6
Sep 18, 2024
- Update __init__.py · 513e0305
  s233039 authored 10 months ago
  
  513e0305
- Update __init__.py · 12e939b8
  s233039 authored 10 months ago
  
  12e939b8
- Finished working on Layered surface segmentation · e5c6fc89
  David Grundfest authored 10 months ago
  
  Gui is finished, refined and consulted I removed the input images as the are redundant I added documentation for the gui and for segment_layers and get_lines
  e5c6fc89
Sep 05, 2024

Merge · d662cfd6
David Grundfest authored 10 months ago

d662cfd6

David Grundfest authored 10 months ago

Now it uses our base classes and is way shorter. Got rid of more than
200 lines of code. I opened an issue https://github.com/gradio-app/gradio/issues/9273
regarding interrupting chain of events.
Deleted or moved some files like notebooks, which shouldnt be part of the package.

912e9724

Sep 04, 2024
- Init · 99b5ff54
  David Grundfest authored 10 months ago
  
  99b5ff54
- merge · 584302ea
  David Grundfest authored 10 months ago
  
  584302ea
Jan 05, 2024
- Updated the process main to show that it works for 2d images and slices from 3d images. · 1622d378
  Aleksandar authored 1 year ago
  
  1622d378
- Big update for handling 3D images. The GUI now takes a 3d image and displays... · 0b4619eb
  Aleksandar authored 1 year ago
  
  Big update for handling 3D images. The GUI now takes a 3d image and displays the slices along the 3 axis. Each axis slice can be moved via a slider, while the rest of the parameters will update each of the slices.
  0b4619eb
Jan 04, 2024
- Updated the sliders and tick box to update the visualisations upon changes... · 2da6c44c
  Aleksandar authored 1 year ago
  
  Updated the sliders and tick box to update the visualisations upon changes instead of using the Relaunch button.
  2da6c44c
- Updated the utils\cli.py to handle gui layers2d. Also added function call in... · 4188d2a9
  Aleksandar authored 1 year ago
  
  Updated the utils\cli.py to handle gui layers2d. Also added function call in layers2d.py for running the gradio interface.
  4188d2a9
- Merge remote-tracking branch 'origin' into layered_surface_segmentation · adea7b49
  Aleksandar authored 1 year ago
  
  adea7b49
- Added descriptions to GUI fields and started on the slice mechanic. · 0f3b7d2f
  Aleksandar authored 1 year ago
  
  0f3b7d2f
Dec 22, 2023
- MVP GUI, including sliders · 5292cf30
  fima authored 1 year ago
  
  5292cf30
- File selection and inpout viz · 6ddcfb10
  fima authored 1 year ago
  
  6ddcfb10
- Minor changes · 9c5bafcd
  Aleksandar authored 1 year ago
  
  9c5bafcd
Dec 20, 2023
- Updated some of the argument names for more transparency. · 44958b8b
  AleksandarLukic96 authored 1 year ago
  
  44958b8b
- Created functions to add lines into plots and subplots. · d96521a9
  AleksandarLukic96 authored 1 year ago
  
  d96521a9
Dec 19, 2023
- Added a function to plot a single image/2s array. · e3c82c8a
  AleksandarLukic96 authored 1 year ago
  
  e3c82c8a
- Created a function to merge segmentations into a single 2d array... · 721e866a
  AleksandarLukic96 authored 1 year ago
  
  Created a function to merge segmentations into a single 2d array representation, which can then be displayed.
  721e866a
- Created a function to display data in subplots. · 9ad52c47
  AleksandarLukic96 authored 1 year ago
  
  9ad52c47
- Fixed minor bug in regards to data type. · eae25f98
  AleksandarLukic96 authored 1 year ago
  
  eae25f98
- Updated and created init file to handles layers2d. · 01814e08
  AleksandarLukic96 authored 1 year ago
  
  01814e08
- Created a notebook, gui file and fixed np32int bug in the data field of the layers2d class. · e0f877f9
  Aleksandar authored 1 year ago
  
  e0f877f9
Dec 15, 2023
- Updated the main to demonstrate the prepare_update function. · 1665a6bc
  AleksandarLukic96 authored 1 year ago
  
  1665a6bc
- Updated documentation for every class function where it made sense to do so,... · 1d227856
  AleksandarLukic96 authored 1 year ago
  
  Updated documentation for every class function where it made sense to do so, i.e. no description neeeded for getters and setters and the like.
  1d227856
- Finished the layers2d class. · 617e2502
  AleksandarLukic96 authored 1 year ago
  
  617e2502
Dec 14, 2023
- Added some more functions to the layers2d class. · 90f434b2
  AleksandarLukic96 authored 1 year ago
  
  90f434b2
- Added some more functions to interact with the fields in the layer2d class. · 22cf0d9e
  AleksandarLukic96 authored 1 year ago
  
  22cf0d9e
- Created folder 'process' and inside a file layers2d.py, which will be used to... · a6675690
  AleksandarLukic96 authored 1 year ago
  
  Created folder 'process' and inside a file layers2d.py, which will be used to demonstrate the layered surface segmentation from the slgbuilder package.
  a6675690
- Created an empty file, which will be used for visualisation of layers2d.py. · 9fe2d666
  AleksandarLukic96 authored 1 year ago
  
  9fe2d666
- Added a .png slice from a nifty file to the img_examples folder. · e7476491
  AleksandarLukic96 authored 1 year ago
  
  e7476491

New Layered Surface Segmentation

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