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Threshold exploration

Closed s212246 requested to merge threshold-exploration into main
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import numpy as np
import numpy as np
import qim3d.processing.filters as filters
import qim3d.processing.filters as filters
from qim3d.utils.logger import log
from qim3d.utils.logger import log
 
import skimage
 
import scipy
def remove_background(
def remove_background(
@@ -88,8 +90,6 @@ def watershed(bin_vol: np.ndarray, min_distance: int = 5) -> tuple[np.ndarray, i
@@ -88,8 +90,6 @@ def watershed(bin_vol: np.ndarray, min_distance: int = 5) -> tuple[np.ndarray, i
![operations-watershed_after](assets/screenshots/operations-watershed_after.png)
![operations-watershed_after](assets/screenshots/operations-watershed_after.png)
"""
"""
import skimage
import scipy
if len(np.unique(bin_vol)) > 2:
if len(np.unique(bin_vol)) > 2:
raise ValueError("bin_vol has to be binary volume - it must contain max 2 unique values.")
raise ValueError("bin_vol has to be binary volume - it must contain max 2 unique values.")
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