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Draft: Convert tiff stacks to zarr

Open s204159 requested to merge convert_tiff_folders into main
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@@ -127,6 +127,8 @@ class Convert:
Returns:
None
"""
assert self.base_name is not None, "Please specify a base name for the tiff stack"
z = zarr.open(zarr_path)
save(tiff_stack_path, z, basename=self.base_name)
@@ -140,6 +142,8 @@ class Convert:
Returns:
zarr.core.Array: zarr array containing the data from the tiff stack
"""
assert self.contains is not None, "Please specify common part of file names for tiff stack."
# ! tiff stack memmap is stored as slices on disk and not as a single file, making assignments to blocks slow.
vol = load(tiff_stack_path, virtual_stack=True, contains=self.contains)
z = zarr.open(
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