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3d removal of background

Merged s204159 requested to merge 3d_removal into main
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@@ -13,10 +13,12 @@ def remove_background(vol, **kwargs):
Returns:
vol: The volume with background removed.
"""
# sets the median filter size to 2 if not specified for removing background artifacts
size = kwargs["size"] if "size" in kwargs else 2
# Create a pipeline with a median filter and a tophat filter
pipeline = filter.Pipeline(
filters.Median(),
filters.Median(size=size),
filters.Tophat(**kwargs)
)
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