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  • 3D_UNet
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Created with Raphaël 2.2.025Feb24181711104330Jan232221201716151312109630Dec2726231812105226Nov2120151331Oct282117161411983230Sep26252419185416Aug2131Jul30292422171529Jun28262017141110630May2928272422152129Apr262322191816121193220Mar118765428Feb2623201916141298131Jan252423225422Dec2120191815141287130Nov28271514102127Oct2619126425Sep181514138731Aug30287Jul5329Jun1426May25171512added data preparation pipeline to docs3D_UNet3D_UNetMerge branch 'branch' into branch '3D_UNet'Merge branch 'threshold_for_v1' into 'main'mainmainThreshold for v1Merge branch 'mesh-pygel3d' into 'main'Mesh pygel3dreq and versionMerge branch 'main' into 'mesh-pygel3d'Merge branch 'tifffile-imagecodecs' into 'main'Tifffile imagecodecsMerge branch 'line-profile' into 'main'Line profileMerge branch 'pre_commits' into 'main'Pre commitschange default backend method in mesh visualizationadd pytest for mesh conversion functionadd html for visualizationremove test filesFix minor errors in documentationfix descriptions and examplesadded augmentation pipeline to docsAdd and fix examplesfixed docstring for augmentationsremoved 2D inferenceremoved 2D augmentationsremoved 2D dataloaderremove all trimesh code and add new functions with pygel3dremoved UNet2Dtemporarydimensions as tuple instead of unpackedexpand image dimensions in dataloadernum_workers = 0 for cpuremoved unsqueeze since extra dimension is added in dataloaderfixing augmentation errorstesting things in notebookrefactored augmentations to use monai insteadadded support for 3D in data preparation functionsAdd pygel3d version of trimesh codeMerge branch 'main' of lab.compute.dtu.dk:QIM/tools/qim3d into 3D_UNetMerge remote-tracking branch 'refs/remotes/origin/main'