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  • 8087839f79d13d743ece9dd414635c2c74cff936
  • main default protected
  • 3D_UNet
  • 3d_watershed
  • conv_zarr_tiff_folders
  • convert_tiff_folders
  • layered_surface_segmentation
  • memmap_txrm
  • notebook_update
  • notebooks
  • notebooksv1
  • optimize_scaleZYXdask
  • save_files_function
  • scaleZYX_mean
  • test
  • threshold-exploration
  • tr_val_te_splits
  • v0.4.1
  • v0.4.0
  • v0.3.9
  • v0.3.3
  • v0.3.2
  • v0.3.1
  • v0.3.0
  • v0.2.0
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Created with Raphaël 2.2.011Feb104330Jan232221201716151312109630Dec2726231812105226Nov2120151331Oct282117161411983230Sep26252419185416Aug2131Jul30292422171529Jun28262017141110630May2928272422152129Apr262322191816121193220Mar118765428Feb2623201916141298131Jan252423225422Dec2120191815141287130Nov28271514102127Oct2619126425Sep181514138731Aug30287Jul5329Jun1426May25171512num_workers = 0 for cpuremoved unsqueeze since extra dimension is added in dataloaderfixing augmentation errorstesting things in notebookrefactored augmentations to use monai insteadadded support for 3D in data preparation functionsMerge branch 'main' of lab.compute.dtu.dk:QIM/tools/qim3d into 3D_UNetMerge remote-tracking branch 'refs/remotes/origin/main'Hotfix: Torch dependencydraft for 3D UNet notebook3D UNet implementatioNmore fixes to docssmall documentation fixupdated segmentation pipeline notebookupdated notebookrenaming existing unet to UNet2DMerge branch 'notebook_unit_testing' into 'main'Notebook unit testingMerge branch 'downloader_print' into 'main'display downloadable filesMerge branch 'filter_inputs' into 'main'Required inputs for filtersMerge branch 'slicer-cbar-behaviour' into 'main'Updated support and release pagecheckup of rest of notebooksnotebooksv1notebooksv1some changes and some new additionsmoved from old qim version to new. Testing if all worksAdd max_scales parameter to export_ome_zarr function for scale limit controlscaleZYX_meanscaleZYX_meanAdd type hints for parameters in scaling methods and fixed method nameSetup for v1.0 releaseMerge branch 'doc_update_for_v1.0' into 'main'Doc update for v1.0attempting to make notebook w segment_layers. Just testing for nownotebooksnotebooksdel notebookminor fixesaddition of headers and some warning handlingChecked docstrings for minor errors w main focus on example codefixfixfix
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