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  • 3D_UNet
  • 3d_watershed
  • conv_zarr_tiff_folders
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  • main default protected
  • memmap_txrm
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Created with Raphaël 2.2.025Feb241711104330Jan232221201716151312109630Dec2726231812105226Nov2120151331Oct282117161411983230Sep26252419185416Aug2131Jul30292422171529Jun28262017141110630May2928272422152129Apr262322191816121193220Mar118765428Feb2623201916141298131Jan252423225422Dec2120191815141287130Nov28271514102127Oct2619126425Sep181514138731Aug30287Jul5329Jun1426May25171512added data preparation pipeline to docs3D_UNet3D_UNetMerge branch 'branch' into branch '3D_UNet'Merge branch 'threshold_for_v1' into 'main'mainmainThreshold for v1Merge branch 'mesh-pygel3d' into 'main'Mesh pygel3dMerge branch 'tifffile-imagecodecs' into 'main'Tifffile imagecodecsMerge branch 'line-profile' into 'main'Line profileMerge branch 'pre_commits' into 'main'Pre commitsadded augmentation pipeline to docsfixed docstring for augmentationsremoved 2D inferenceremoved 2D augmentationsremoved 2D dataloaderremoved UNet2Dtemporarydimensions as tuple instead of unpackedexpand image dimensions in dataloadernum_workers = 0 for cpuremoved unsqueeze since extra dimension is added in dataloaderfixing augmentation errorstesting things in notebookrefactored augmentations to use monai insteadadded support for 3D in data preparation functionsMerge branch 'main' of lab.compute.dtu.dk:QIM/tools/qim3d into 3D_UNetMerge remote-tracking branch 'refs/remotes/origin/main'Hotfix: Torch dependencydraft for 3D UNet notebook3D UNet implementatioNmore fixes to docssmall documentation fixupdated segmentation pipeline notebookupdated notebookrenaming existing unet to UNet2DMerge branch 'notebook_unit_testing' into 'main'Notebook unit testingMerge branch 'downloader_print' into 'main'