Reference update

README.md

-# coursebox
+# Coursebox DTU
+DTU course management software.
 
-DTU course management
\ No newline at end of file
+## Installation
+```terminal
+pip install coursebox
+```
+## What it can do 
+ - Single semester-dependent configuration file
+ - Integrates with DTU Inside/DTU Learn
+ - Distribution/evalauation of project reports in Learn-compatible format
+ - Quiz-generation in DTU Learn/Beamer friendly format
+ - Automatic website/syllabus generation 
+ - Automatic generation of lectures handouts/exercises (you don't have to track dynamic content like dates/lecture titles; it is all in the configuration)
+ - Easy compilation to 2/5 day formats (Continuous education)
+
+## Usage
+Coursebox requires a specific directory structure. It is easier to start with an existing course and adapt to your needs. Please contact me at tuhe@dtu.dk for more information.
+
+## Citing
+```bibtex
+@online{coursebox,
+	title={Coursebox (0.1.1): \texttt{pip install coursebox}},
+	url={https://lab.compute.dtu.dk/tuhe/coursebox},
+	urldate = {2021-09-06}, 
+	publisher={Tue Herlau},
+	author={Tue Herlau},
+	comments={See url{asdfsdaf} for examples},
+	year={2021},
+}
+```
\ No newline at end of file

docs/README.jinja.md

+# Coursebox DTU
+DTU course management software.
+
+## Installation
+```terminal
+pip install coursebox
+```
+## What it can do 
+ - Single semester-dependent configuration file
+ - Integrates with DTU Inside/DTU Learn
+ - Distribution/evalauation of project reports in Learn-compatible format
+ - Quiz-generation in DTU Learn/Beamer friendly format
+ - Automatic website/syllabus generation 
+ - Automatic generation of lectures handouts/exercises (you don't have to track dynamic content like dates/lecture titles; it is all in the configuration)
+ - Easy compilation to 2/5 day formats (Continuous education)
+
+## Usage
+Coursebox requires a specific directory structure. It is easier to start with an existing course and adapt to your needs. Please contact me at tuhe@dtu.dk for more information.
+
+## Citing
+```bibtex
+{{bibtex}}
+```
\ No newline at end of file

docs/build_docs.py

+
+import jinja2
+if __name__ == "__main__":
+    from jinjafy.bibliography_maker import make_bibliography
+    bib = make_bibliography("../setup.py", "./")
+    # bib = ''
+    data = {'bibtex': bib}
+
+    with open("README.jinja.md", 'r') as f:
+        s = jinja2.Environment().from_string(f.read()).render(data)
+    with open("../README.md", 'w') as f:
+        f.write(s)
+

docs/coursebox.bib

+@online{coursebox,
+	title={Coursebox (0.1.1): \texttt{pip install coursebox}},
+	url={https://lab.compute.dtu.dk/tuhe/coursebox},
+	urldate = {2021-09-06}, 
+	publisher={Tue Herlau},
+	author={Tue Herlau},
+	comments={See url{asdfsdaf} for examples},
+	year={2021},
+}
\ No newline at end of file

index.tex

+ 
+\documentclass[aspectratio=43]{beamer}
+\usepackage{etoolbox}
+\newtoggle{overlabel_includesvgs}
+\newtoggle{overlabel_includelabels}
+
+\toggletrue{overlabel_includesvgs}
+\toggletrue{overlabel_includelabels}
+
+\input{beamer_slider_preamble.tex}
+
+\begin{document}
+\begin{frame}
+\maketitle
+\end{frame}
+
+\begin{frame}\osvg{myoverlay}
+\title{Slide with overlay}
+This is some example text!
+\end{frame}
+
+\end{document}

requirements.txt

@@ -9,5 +9,5 @@ matplotlib
 numpy
 pycode_similar
 jinjafy
-slider
+beamer-slider
 tinydb

setup.py

@@ -11,7 +11,7 @@ with open("README.md", "r", encoding="utf-8") as fh:
 # beamer-slider
 setuptools.setup(
     name="coursebox",
-    version="0.1.0",
+    version="0.1.1",
     author="Tue Herlau",
     author_email="tuhe@dtu.dk",
     description="A course management system currently used at DTU",
@@ -30,5 +30,5 @@ setuptools.setup(
     package_dir={"": "src"},
     packages=setuptools.find_packages(where="src"),
     python_requires=">=3.8",
-    install_requires=[str(r) for r in pkg_resources.parse_requirements('requirements.txt')],
+    install_requires=['openpyxl', 'tika','xlwings','pybtex','langdetect','wexpect','pexpect','matplotlib','numpy','pycode_similar','jinjafy','beamer-slider','tinydb'],
 )

src/coursebox.egg-info/PKG-INFO

 Metadata-Version: 2.1
 Name: coursebox
-Version: 0.1.0
+Version: 0.1.1
 Summary: A course management system currently used at DTU
 Home-page: https://lab.compute.dtu.dk/tuhe/coursebox
 Author: Tue Herlau
@@ -15,7 +15,7 @@ Requires-Python: >=3.8
 Description-Content-Type: text/markdown
 License-File: LICENSE
 
-# coursebox
+# Coursebox DTU
 
-DTU course management
+DTU course management software. 
 

src/coursebox.egg-info/SOURCES.txt

@@ -13,7 +13,6 @@ src/coursebox.egg-info/top_level.txt
 src/coursebox/book/__init__.py
 src/coursebox/book/exam_includer.py
 src/coursebox/core/__init__.py
-src/coursebox/core/citations.py
 src/coursebox/core/info.py
 src/coursebox/core/info_paths.py
 src/coursebox/core/projects.py

src/coursebox.egg-info/requires.txt

-requirements.txt
+openpyxl
+tika
+xlwings
+pybtex
+langdetect
+wexpect
+pexpect
+matplotlib
+numpy
+pycode_similar
+jinjafy
+beamer-slider
+tinydb

src/coursebox/core/citations.py

-import os
-import pybtex
-import io
-# import six
-from coursebox.core.info_paths import get_paths
-from pybtex import plugin
-from pybtex.database.input import bibtex
-
-def get_references(bibfile, gi):
-
-    """
-    Import and convert slides dynamically.
-    """
-    # base_dir = paths['02450public'] + "/Notes/Latex"
-    bibf = bibfile #base_dir + "/library.bib"
-    if not os.path.exists(bibf):
-        return None
-
-     # pybtex.plugin
-
-
-    pybtex_style = plugin.find_plugin('pybtex.style.formatting', 'alpha')()
-    pybtex_html_backend = plugin.find_plugin('pybtex.backends', 'html')()
-    pybtex_plain_backend = plugin.find_plugin('pybtex.backends', 'plaintext')()
-
-    pybtex_parser = bibtex.Parser()
-
-    with open(bibf, 'r', encoding='utf8') as f:
-        data = pybtex_parser.parse_stream(f)
-
-    # Tue: This used to be:
-    # import six
-    # itv = six.itervalues(data.entries)
-    # itv = iter(data.entries)
-    data_formatted = pybtex_style.format_entries(data.entries.values())
-    refs = {}
-
-    if 'auxfile' in gi:
-        all_references = parse_aux(gi['auxfile'], bibtex=gi['bibtex'])
-    else:
-        all_references = {}
-
-    for entry in data_formatted:
-        output = io.StringIO()
-        output_plain = io.StringIO()
-        pybtex_plain_backend.output = output_plain.write
-        pybtex_html_backend.output = output.write
-        pybtex_html_backend.write_entry(entry.key, entry.label, entry.text.render(pybtex_html_backend))
-
-        pybtex_plain_backend.write_entry(entry.key, entry.label, entry.text.render(pybtex_plain_backend))
-
-        html = output.getvalue()
-        plain = output_plain.getvalue()
-
-        entry.text.parts[-2].__str__()
-        url = ""
-        for i,p in enumerate(entry.text.parts):
-            if "\\url" in p.__str__():
-                url = entry.text.parts[i+1]
-                break
-        url = url.__str__()
-        i1 = html.find("\\textbf")
-        i2 = html.find("</span>", i1)
-        dht = html[i1:i2]
-        dht = dht[dht.find(">")+1:]
-        html = html[:i1] + " <b>"+dht+"</b> " + html[i2+7:]
-
-        plain = plain.replace("\\textbf ", "")
-        iu = plain.find("URL")
-        if iu > 0:
-            plain = plain[:iu]
-
-        refs[entry.key] = {'html': html,
-                           'plain': plain,
-                            'label': entry.label,
-                            'filename': url,
-                            'references': all_references}
-
-    newref = {}
-    ls = lambda x: x if isinstance(x, list) else [x]
-    if 'tex_command' in gi:
-        for cmd, aux, display in zip( ls(gi['tex_command']), ls(gi['tex_aux'] ), ls( gi['tex_display'] ) ):
-            ax = parse_aux(aux, bibtex=gi['bibtex'])
-            for k in ax:
-                ax[k]['pyref'] = display%(ax[k]['nicelabel'],)
-            newref[cmd] = ax
-
-    return refs, newref
-
-
-def parse_aux(auxfile, bibtex):
-    paths = get_paths()
-    auxfile = os.path.join(paths['02450public'], auxfile)
-    if not os.path.exists(auxfile):
-        print(auxfile)
-        from warnings import warn
-        warn("Could not find file")
-        return {}
-
-    with open(auxfile, 'r') as f:
-        items = f.readlines()
-    entries = {}
-    for e in items:
-        e = e.strip()
-        if e.startswith("\\newlabel") and "@cref" in e:
-            # print(e)
-            i0 = e.find("{")
-            i1 = e.find("@cref}")
-            key = e[i0+1:i1]
-
-            j0 = e.find("{{[", i0)+3
-            j1 = e.find("}", j0)
-
-            val = e[j0:j1]
-
-            label = val[:val.find("]")]
-            number = val[val.rfind("]")+1:]
-
-            if label == "equation":
-                nlabel = f"eq. ({number})"
-            else:
-                nlabel = label.capitalize() + " " + number
-
-            coderef = "\\cite[%s]{%s}"%(nlabel, bibtex) if bibtex is not None else None
-            entries[key] = {'pyref': coderef, 'nicelabel': nlabel, 'rawlabel': label, 'number': number}
-
-    return entries

src/coursebox/core/info.py

@@ -2,8 +2,6 @@ from datetime import timedelta
 from datetime import datetime
 import coursebox
 # import thtools
-import os
-import shutil
 from coursebox.thtools_base import list_dict2dict_list
 # import jinjafy
 import openpyxl
@@ -113,20 +111,6 @@ def first_day_of_class(info):
     return first_day_of_class
 
 
-def find_tex_cite(s, start=0, key="\\cite"):
-    txt = None
-    i = s.find(key, start)
-    if i < 0:
-        return (i,None), None, None
-    j = s.find("}", i)
-    cite = s[i:j + 1]
-
-    if cite.find("[") > 0:
-        txt = cite[cite.find("[") + 1:cite.find("]")]
-
-    reference = cite[cite.find("{") + 1:cite.find("}")]
-    return (i, j), reference, txt
-
 def lectures(info, pensum=None):
     ow = timedelta(days=7)
     d = first_day_of_class(info)
@@ -267,7 +251,7 @@ def class_information():
     del gi['key']
     del gi['value']
 
-    from coursebox.core.citations import get_references
+    from snipper.load_citations import get_references
     if "pensum_bib" in gi:
         refs, nrefs = get_references(paths['02450public'] + "/" + gi['pensum_bib'], gi)
         d['references'], d['new_references'] = refs, nrefs

src/coursebox/core/projects.py

@@ -12,13 +12,11 @@ from openpyxl.utils import get_column_letter
 import matplotlib.pyplot as plt
 import langdetect
 import xlwings as xw
-
 from coursebox.core.projects_info import get_output_file, INSTRUCTOR_ROW, STUDENT_ID_ROW, parse_column
 from coursebox.core.projects_info import EVALUATION_ROW_END, EVALUATION_ROW_START, WEIGHT_ROW_START, RANGE_MIN_COL, DELTA_ALLOWED_ROW
 from coursebox.core.info import get_paths, class_information, semester_id
 from coursebox.core import projects_info
 from coursebox.core.projects_plagiarism import plagiarism_checker
-
 from jinjafy.cache import cache_contains_dir, cache_update_dir
 from jinjafy.plot.plot_helpers import get_colors
 import time

src/coursebox/material/homepage_lectures_exercises.py

@@ -10,7 +10,7 @@ from jinjafy import jinjafy_template
 from coursebox.core.info_paths import get_paths
 from slider.legacy_importer import slide_to_image
 from slider.legacy_importer import li_import
-from slider.slider import set_svg_background_images
+from slider.slide import set_svg_background_images
 from coursebox.book.exam_includer import HOMEWORK_PROBLEMS
 from coursebox.core.info import class_information
 from coursebox.material.lecture_questions import lecture_question_compiler

src/coursebox/material/lecture_questions.py

@@ -5,7 +5,7 @@ import glob
 from jinjafy import jinjafy_template
 from slider import latexmk
 from coursebox.thtools_base import execute_command
-from slider.slider import slide_no_by_text, recursive_tex_apply
+from slider.slide import slide_no_by_text, recursive_tex_apply
 from slider.legacy_importer import slide_to_image
 
 

src/coursebox/material/snipper.py

-from coursebox.core.info import find_tex_cite
+from snipper.load_citations import find_tex_cite
 import os
 import functools
 from jinjafy import execute_command