To reproduce the results from our paper (link to come), you will need to clone this repository or download it as a .zip file. Then, download the input_data and results_justDictionaries folders from DTU Data at XX. Place both within the Lung_ECM folder, besides the code folder. Rename 'results_justDictionaries' to 'results' so as to reproduce the exact results from our paper. Under the same DTU Data link you will also find the complete set of results under 'results_complete'.
The following figure is a schematic view of the code, results and input_data folders. The table below describes further the content of the code folder found in this repository.
Code contains:
Code contains:
| File name | Description | Input | Output |
| File name | Description | Input | Output |
| --------- | ----------- | ----- | ------ |
| --------- | ----------- | ----- | ------ |
| lung_to_lif.py | Used to transform data acquired with a Leica microscope into a format we can work with | EDIT | data_corrected_bis |
| lung_to_lif.py | Used to transform data acquired with a Leica microscope into a format we can work with | EDIT | input_data/raw |
nogenerate data_corrected_bis, where each 3D scan is stored as a sequence of .png files under a folder with 'frame' as prefix.
nogenerate data_corrected_bis, where each 3D scan is stored as a sequence of .png files under a folder with 'frame' as prefix.
