Newer
Older
import time
import cv2
import numpy as np
import matplotlib.pyplot as plt
from skimage import exposure
from skimage.filters import gaussian
from skimage.feature import canny
from skimage.graph import route_through_array
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
def compute_cost_image(path, sigma=3):
### Load image
image = cv2.imread(path, cv2.IMREAD_GRAYSCALE)
# Apply histogram equalization
image_contrasted = exposure.equalize_adapthist(image, clip_limit=0.01)
# Apply smoothing
smoothed_img = gaussian(image_contrasted, sigma=sigma)
# Apply Canny edge detection
canny_img = canny(smoothed_img)
# Create cost image
cost_img = 1.0 / (canny_img + 1e-5) # Invert edges: higher cost where edges are stronger
return cost_img
def find_path(cost_image, points):
if len(points) != 2:
raise ValueError("Points should be a list of 2 points: seed and target.")
seed_rc, target_rc = points
path_rc, cost = route_through_array(
cost_image,
start=seed_rc,
end=target_rc,
fully_connected=True
)
return path_rc
"""
Downsample `img` to `scale_percent` size and scale the given points accordingly.
Returns (downsampled_img, (scaled_seed, scaled_target)).
"""
if scale_percent == 100:
return img, (tuple(points[0]), tuple(points[1]))
else:
width = int(img.shape[1] * scale_percent / 100)
height = int(img.shape[0] * scale_percent / 100)
new_dimensions = (width, height)
downsampled_img = cv2.resize(img, new_dimensions, interpolation=cv2.INTER_AREA)
# Scaling factors
scale_x = width / img.shape[1]
scale_y = height / img.shape[0]
seed_xy = tuple(points[0])
target_xy = tuple(points[1])
scaled_seed_xy = (int(seed_xy[0] * scale_x), int(seed_xy[1] * scale_y))
scaled_target_xy = (int(target_xy[0] * scale_x), int(target_xy[1] * scale_y))
return downsampled_img, (scaled_seed_xy, scaled_target_xy)
def compute_cost(image, sigma=3.0, epsilon=1e-5):
"""
Smooth the image, run Canny edge detection, then invert the edge map into a cost image.
"""
# Apply histogram equalization
image_contrasted = exposure.equalize_adapthist(image, clip_limit=0.01)
# Apply smoothing
smoothed_img = gaussian(image_contrasted, sigma=sigma)
# Apply Canny edge detection
# Create cost image
cost_img = 1.0 / (canny_img + epsilon) # Invert edges: higher cost where edges are stronger
def backtrack_pixels_on_image(img_color, path_coords, bgr_color=(0, 0, 255)):
"""
Color the path on the (already converted BGR) image in the specified color.
`path_coords` should be a list of (row, col) or (y, x).
"""
for (row, col) in path_coords:
img_color[row, col] = bgr_color
return img_color