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Commit ad886118 authored by Christian Kento Rasmussen's avatar Christian Kento Rasmussen
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fixed bug

parent 9d329801
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2 merge requests!102Conv zarr tiff folders,!100Conv zarr nifti
...@@ -50,7 +50,7 @@ class Convert: ...@@ -50,7 +50,7 @@ class Convert:
case (".zarr", ".nii"): case (".zarr", ".nii"):
return self.convert_zarr_to_nifti(input_path, output_path) return self.convert_zarr_to_nifti(input_path, output_path)
case (".zarr", ".nii.gz"): case (".zarr", ".nii.gz"):
return self.convert_zarr_to_nifti(input_path, output_path, compress=True) return self.convert_zarr_to_nifti(input_path, output_path, compression=True)
case _: case _:
raise ValueError("Unsupported file format") raise ValueError("Unsupported file format")
# Fail # Fail
...@@ -139,7 +139,7 @@ class Convert: ...@@ -139,7 +139,7 @@ class Convert:
return z return z
def convert_zarr_to_nifti(self, zarr_path, nifti_path, compress=False): def convert_zarr_to_nifti(self, zarr_path, nifti_path, compression=False):
"""Convert a zarr file to a nifti file """Convert a zarr file to a nifti file
Args: Args:
...@@ -150,7 +150,7 @@ class Convert: ...@@ -150,7 +150,7 @@ class Convert:
None None
""" """
z = zarr.open(zarr_path) z = zarr.open(zarr_path)
save(nifti_path, z, compress=compress) save(nifti_path, z, compression=compression)
def convert(input_path: str, output_path: str, chunk_shape: tuple = (64, 64, 64)): def convert(input_path: str, output_path: str, chunk_shape: tuple = (64, 64, 64)):
......
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