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QIM
Tools
qim3d
Commits
Commits · ac6a7a44d1e8b986fa6c69dd4074057f5e0ad890
ac6a7a44d1e8b986fa6c69dd4074057f5e0ad890
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ac6a7a44d1e8b986fa6c69dd4074057f5e0ad890
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16
main
default
protected
3D_UNet
notebooksv1
scaleZYX_mean
notebooks
convert_tiff_folders
test
notebook_update
threshold-exploration
optimize_scaleZYXdask
layered_surface_segmentation
conv_zarr_tiff_folders
3d_watershed
tr_val_te_splits
save_files_function
memmap_txrm
Tags
8
v0.4.1
v0.4.0
v0.3.9
v0.3.3
v0.3.2
v0.3.1
v0.3.0
v0.2.0
25 results
qim3d
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authors
abda
abda
fima
fima
hmkj
hmkj
jonspo
jonspo
julika
julika
mapiz
mapiz
ofhkr
s184364
reen
reen
s184058
s184058
s193396
s193396
s194066
s194066
s204159
s204159
s212246
s212246
s214735
s214735
s214743
s214743
s233039
s233039
16 authors
Browse files
Feb 11, 2025
dimensions as tuple instead of unpacked
· ac6a7a44
s193396
authored
5 months ago
ac6a7a44
expand image dimensions in dataloader
· d0b1d98a
s193396
authored
5 months ago
d0b1d98a
num_workers = 0 for cpu
· f068dd86
s193396
authored
5 months ago
f068dd86
removed unsqueeze since extra dimension is added in dataloader
· b4ea1bf3
s193396
authored
5 months ago
b4ea1bf3
fixing augmentation errors
· ed05746d
s193396
authored
5 months ago
ed05746d
testing things in notebook
· 24923e92
s193396
authored
5 months ago
24923e92
refactored augmentations to use monai instead
· ab581084
s193396
authored
5 months ago
ab581084
added support for 3D in data preparation functions
· 070fc09a
s193396
authored
5 months ago
070fc09a
Merge branch 'main' of lab.compute.dtu.dk:QIM/tools/qim3d into 3D_UNet
· 93942fe3
s193396
authored
5 months ago
93942fe3
Feb 10, 2025
Merge remote-tracking branch 'refs/remotes/origin/main'
· 3e1468bd
fima
authored
5 months ago
3e1468bd
Hotfix: Torch dependency
· 9278a1ef
fima
authored
5 months ago
9278a1ef
Feb 04, 2025
draft for 3D UNet notebook
· e21f1d51
s193396
authored
5 months ago
e21f1d51
3D UNet implementatioN
· ae49d74c
s193396
authored
5 months ago
ae49d74c
more fixes to docs
· 7f406282
s193396
authored
5 months ago
7f406282
small documentation fix
· 6866dfcc
s193396
authored
5 months ago
6866dfcc
updated segmentation pipeline notebook
· 3c284b4a
s193396
authored
5 months ago
3c284b4a
updated notebook
· 968d7efe
s193396
authored
5 months ago
968d7efe
renaming existing unet to UNet2D
· b2a8a35c
s193396
authored
5 months ago
b2a8a35c
Merge branch 'notebook_unit_testing' into 'main'
· 15a48272
fima
authored
5 months ago
15a48272
Notebook unit testing
· 841bd675
s193396
authored
5 months ago
and
fima
committed
5 months ago
841bd675
Feb 03, 2025
Merge branch 'downloader_print' into 'main'
· 29bcad95
fima
authored
5 months ago
29bcad95
display downloadable files
· 790dfcf0
s214735
authored
5 months ago
and
fima
committed
5 months ago
790dfcf0
Merge branch 'filter_inputs' into 'main'
· 2a6c47cc
fima
authored
5 months ago
2a6c47cc
Required inputs for filters
· 9055142f
s214735
authored
5 months ago
and
fima
committed
5 months ago
9055142f
Merge branch 'slicer-cbar-behaviour' into 'main'
· 71240179
fima
authored
5 months ago
71240179
Jan 30, 2025
Updated support and release page
· 03a5a459
fima
authored
5 months ago
03a5a459
Jan 21, 2025
Setup for v1.0 release
· aff52c48
fima
authored
6 months ago
aff52c48
Merge branch 'doc_update_for_v1.0' into 'main'
· 25724b70
fima
authored
6 months ago
25724b70
Doc update for v1.0
· 2081a3c7
fima
authored
6 months ago
2081a3c7
Jan 20, 2025
Merge branch 'docstrings' into 'main'
· 0a6b3a78
fima
authored
6 months ago
0a6b3a78
Docstrings
· c44b28cb
s214735
authored
6 months ago
and
fima
committed
6 months ago
c44b28cb
Merge branch 'gradio_plot_flicker_fix' into 'main'
· 82aa0238
fima
authored
6 months ago
82aa0238
Gradio plot flicker fix
· 6709038f
s204159
authored
6 months ago
and
fima
committed
6 months ago
6709038f
Jan 12, 2025
added new behaviour for color_bar in slicer
· d2ee8461
David Johansen
authored
6 months ago
d2ee8461
Jan 10, 2025
Merge branch 'tests_merge_fix' into 'main'
· 191449a5
fima
authored
6 months ago
191449a5
Refactor tests for processing and adapt it to new library structure, plus fix...
· ed4dfcf8
fima
authored
6 months ago
ed4dfcf8
Merge branch 'fix-unit-tests' into 'main'
· 76e3a4c7
fima
authored
6 months ago
76e3a4c7
Fix unit tests
· d5ab756a
s212246
authored
6 months ago
and
fima
committed
6 months ago
d5ab756a
Merge branch 'v1-prep_itk-vtk' into 'main'
· 31fba17b
fima
authored
6 months ago
31fba17b
Change of structure for v1
· 8efe6842
s233039
authored
6 months ago
and
fima
committed
6 months ago
8efe6842
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