.gitignore

@@ -11,10 +11,16 @@ build/
 # Development and editor files
 .vscode/
 .idea/
+.cache/
+.pytest_cache/
 *.swp
 *.swo
 *.pyc
 *~
+*.html
 
 # Notebook checkpoints
 .ipynb_checkpoints/
+
+# MacOS finder files
+*.DS_Store
\ No newline at end of file

MANIFEST.in

-recursive-include qim3d/img_examples *
+recursive-include qim3d/examples *
 recursive-include qim3d/css *

README.md

-# QIM3D (Quantitative Imaging in 3D)
+# Qim3D (Quantitative Imaging in 3D)
 
-`qim3D` is a Python library for quantitative imaging analysis in 3D. It provides functionality for handling data, as well as tools for visualization and analysis.
+The `qim3d` (kɪm θriː diː) library is designed to make it easier to work with 3D imaging data in Python. It offers a range of features, including data loading and manipulation, image processing and filtering, visualization of 3D data, and analysis of imaging results.
 
-This library contains the tools and functionalities of the QIM platform, accessible at https://qim.dk/platform
+You can easily load and process 3D image data from various file formats, apply filters and transformations to the data, visualize the results using interactive plots and 3D rendering, and perform quantitative analysis on the images.
 
-## Installation
+Whether you are working with medical imaging data, materials science data, or any other type of 3D imaging data, `qim3d` provides a convenient and powerful set of tools to help you analyze and understand your data.
 
-Install the latest stable version by using pip:
+Documentation available at https://platform.qim.dk/qim3d/
 
-```bash
-pip install qim3d
-```
-
-Or clone this repository for the most recent version.
-
-
-# Usage
-Some basic funtionalites are descibred here. The full documentation is still under development.
-
-## Loading Data
-To load image data from a file, use `qim.io.load()`
-
-```python
-import qim3d
-
-# Load a file
-vol = qim3d.io.load("path/to/file.tif")
-
-# Load a file as a virtual stack
-vol = qim3d.io.load("path/to/file.tif", virtual_stack=True)
-```
-
-## Visualize data
-You can easily check slices from your volume using `slice_viz`
-
-```python
-import qim3d
-
-img = qim3d.examples.fly_150x256x256
-
-# By default shows the middle slice
-qim3d.viz.slice_viz(img)
-
-# Or we can specifly positions
-qim3d.viz.slice_viz(img, position=[0,32,128])
-
-# Parameters for size and colormap are also possible
-qim3d.viz.slice_viz(img, img_width=6, img_height=6, cmap="inferno")
-
-```
-
-
-## GUI Components
-The library also provides GUI components for interactive data analysis and exploration. 
-The `qim3d.gui` module contains various classes for visualization and analysis:
-
-```python
-import qim3d
-
-app = qim3d.gui.iso3d.Interface()
-app.launch()
-```
-
-# Contributing
-Contributions to `qim3d` are welcome! If you find a bug, have a feature request, or would like to contribute code, please open an issue or submit a pull request.
 
 # License
 This project is licensed under the MIT License.
\ No newline at end of file

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