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Commit bebcfe33 authored by patmjen's avatar patmjen
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Update Python version for guide

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...@@ -29,13 +29,15 @@ a100sh ...@@ -29,13 +29,15 @@ a100sh
2. Load modules for Python by entering: 2. Load modules for Python by entering:
``` ```
module load python3/3.8.9 module load python3/3.9.14
module load numpy/1.19.5-python-3.8.9-openblas-0.3.13 module load numpy/1.23.3-python-3.9.14-openblas-0.3.21
module load scipy/1.5.4-python-3.8.9 module load scipy/1.9.1-python-3.9.14
module load cuda/11.0 module load matplotlib/3.6.0-numpy-1.23.3-python-3.9.14
module load cuda/11.6
``` ```
We load `numpy` and `scipy` as modules, since the HPC team have made optimized versions for the HPC cluster. We load `numpy`, `scipy`, and `matplotlib` as modules, because the HPC team have made optimized versions for the HPC cluster.
NOTE: this uses Python 3.8 but others are available.
> __NOTE:__ This guide uses Python 3.9 and CUDA 11.6 but other versions are available.
3. Create a virtualenv by running: 3. Create a virtualenv by running:
``` ```
...@@ -62,10 +64,11 @@ You should now be able to install packages with pip install <PACKAGE> as normal. ...@@ -62,10 +64,11 @@ You should now be able to install packages with pip install <PACKAGE> as normal.
2. Load modules for Python by entering: 2. Load modules for Python by entering:
``` ```
module load python3/3.8.9 module load python3/3.9.14
module load numpy/1.19.5-python-3.8.9-openblas-0.3.13 module load numpy/1.23.3-python-3.9.14-openblas-0.3.21
module load scipy/1.5.4-python-3.8.9 module load scipy/1.9.1-python-3.9.14
module load cuda/11.0 module load matplotlib/3.6.0-numpy-1.23.3-python-3.9.14
module load cuda/11.6
``` ```
We load `numpy` and `scipy` as modules, since the HPC team have made optimized versions for the HPC cluster. We load `numpy` and `scipy` as modules, since the HPC team have made optimized versions for the HPC cluster.
...@@ -77,10 +80,11 @@ You should now be able to install packages with pip install <PACKAGE> as normal. ...@@ -77,10 +80,11 @@ You should now be able to install packages with pip install <PACKAGE> as normal.
> __Pro tip:__ To make life easy, put these commands in a bash script called `init.sh`: > __Pro tip:__ To make life easy, put these commands in a bash script called `init.sh`:
> ``` > ```
> #!/bin/bash > #!/bin/bash
> module load python3/3.8.9 > module load python3/3.9.14
> module load numpy/1.19.5-python-3.8.9-openblas-0.3.13 > module load numpy/1.23.3-python-3.9.14-openblas-0.3.21
> module load scipy/1.5.4-python-3.8.9 > module load scipy/1.9.1-python-3.9.14
> module load cuda/11.0 > module load matplotlib/3.6.0-numpy-1.23.3-python-3.9.14
> module load cuda/11.6
> >
> source <VENV_NAME>/bin/activate > source <VENV_NAME>/bin/activate
> ``` > ```
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