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QIM
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qim3d
Commits
0402a140
Commit
0402a140
authored
1 month ago
by
fima
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imports fix
parent
a11f6b3d
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2 changed files
qim3d/io/__init__.py
+3
-3
3 additions, 3 deletions
qim3d/io/__init__.py
qim3d/io/_convert.py
+4
-3
4 additions, 3 deletions
qim3d/io/_convert.py
with
7 additions
and
6 deletions
qim3d/io/__init__.py
+
3
−
3
View file @
0402a140
# from ._sync import Sync # this will be added back after future development
# from ._sync import Sync # this will be added back after future development
from
._convert
import
convert
from
._downloader
import
Downloader
from
._loading
import
load
,
load_mesh
from
._loading
import
load
,
load_mesh
from
._
ome_zarr
import
export_ome_zarr
,
import_ome_zar
r
from
._
downloader
import
Downloade
r
from
._saving
import
save
,
save_mesh
from
._saving
import
save
,
save_mesh
from
._convert
import
convert
from
._ome_zarr
import
export_ome_zarr
,
import_ome_zarr
This diff is collapsed.
Click to expand it.
qim3d/io/_convert.py
+
4
−
3
View file @
0402a140
...
@@ -7,9 +7,10 @@ import numpy as np
...
@@ -7,9 +7,10 @@ import numpy as np
import
tifffile
as
tiff
import
tifffile
as
tiff
import
zarr
import
zarr
import
zarr.core
import
zarr.core
import
qim3d
from
tqdm
import
tqdm
from
tqdm
import
tqdm
from
qim3d.io
import
save
from
qim3d.utils._misc
import
stringify_path
from
qim3d.utils._misc
import
stringify_path
...
@@ -121,7 +122,7 @@ class Convert:
...
@@ -121,7 +122,7 @@ class Convert:
"""
"""
z
=
zarr
.
open
(
zarr_path
)
z
=
zarr
.
open
(
zarr_path
)
save
(
tif_path
,
z
)
qim3d
.
io
.
save
(
tif_path
,
z
)
def
convert_nifti_to_zarr
(
self
,
nifti_path
:
str
,
zarr_path
:
str
)
->
zarr
.
core
.
Array
:
def
convert_nifti_to_zarr
(
self
,
nifti_path
:
str
,
zarr_path
:
str
)
->
zarr
.
core
.
Array
:
"""
"""
...
@@ -173,7 +174,7 @@ class Convert:
...
@@ -173,7 +174,7 @@ class Convert:
"""
"""
z
=
zarr
.
open
(
zarr_path
)
z
=
zarr
.
open
(
zarr_path
)
save
(
nifti_path
,
z
,
compression
=
compression
)
qim3d
.
io
.
save
(
nifti_path
,
z
,
compression
=
compression
)
def
convert
(
def
convert
(
...
...
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