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QIM
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qim3d
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Commits · a065371b9ff29ed8a011576c67ca89cd37f65df5
a065371b9ff29ed8a011576c67ca89cd37f65df5
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a065371b9ff29ed8a011576c67ca89cd37f65df5
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16
main
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3D_UNet
notebooksv1
scaleZYX_mean
notebooks
convert_tiff_folders
test
notebook_update
threshold-exploration
optimize_scaleZYXdask
layered_surface_segmentation
conv_zarr_tiff_folders
3d_watershed
tr_val_te_splits
save_files_function
memmap_txrm
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8
v0.4.1
v0.4.0
v0.3.9
v0.3.3
v0.3.2
v0.3.1
v0.3.0
v0.2.0
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qim3d
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abda
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fima
fima
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julika
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reen
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16 authors
Browse files
Feb 25, 2025
Merge branch 'branch' into branch '3D_UNet'
· a065371b
s193396
authored
6 months ago
a065371b
Feb 24, 2025
Merge branch 'threshold_for_v1' into 'main'
· e2918f51
fima
authored
6 months ago
e2918f51
Threshold for v1
· 5e7d8903
fima
authored
6 months ago
5e7d8903
Merge branch 'mesh-pygel3d' into 'main'
· 9b822c1e
fima
authored
6 months ago
9b822c1e
Mesh pygel3d
· 16c5a7cb
s212246
authored
6 months ago
and
fima
committed
6 months ago
16c5a7cb
Merge branch 'tifffile-imagecodecs' into 'main'
· 3553c935
fima
authored
6 months ago
3553c935
Tifffile imagecodecs
· 0659c34a
s212246
authored
6 months ago
and
fima
committed
6 months ago
0659c34a
Merge branch 'line-profile' into 'main'
· 514fee2a
fima
authored
6 months ago
514fee2a
Line profile
· b9131fdc
s214743
authored
6 months ago
and
fima
committed
6 months ago
b9131fdc
Merge branch 'pre_commits' into 'main'
· 14bed6a3
fima
authored
6 months ago
14bed6a3
Pre commits
· 52b613b5
s193396
authored
6 months ago
and
fima
committed
6 months ago
52b613b5
Feb 17, 2025
added augmentation pipeline to docs
· 19f96d43
s193396
authored
6 months ago
19f96d43
fixed docstring for augmentations
· 9d72262c
s193396
authored
6 months ago
9d72262c
removed 2D inference
· 505419af
s193396
authored
6 months ago
505419af
removed 2D augmentations
· f79041f8
s193396
authored
6 months ago
f79041f8
removed 2D dataloader
· ddc40406
s193396
authored
6 months ago
ddc40406
removed UNet2D
· 6f8cb981
s193396
authored
6 months ago
6f8cb981
temporary
· 3d734ce5
s193396
authored
6 months ago
3d734ce5
Feb 11, 2025
dimensions as tuple instead of unpacked
· ac6a7a44
s193396
authored
6 months ago
ac6a7a44
expand image dimensions in dataloader
· d0b1d98a
s193396
authored
6 months ago
d0b1d98a
num_workers = 0 for cpu
· f068dd86
s193396
authored
6 months ago
f068dd86
removed unsqueeze since extra dimension is added in dataloader
· b4ea1bf3
s193396
authored
6 months ago
b4ea1bf3
fixing augmentation errors
· ed05746d
s193396
authored
6 months ago
ed05746d
testing things in notebook
· 24923e92
s193396
authored
6 months ago
24923e92
refactored augmentations to use monai instead
· ab581084
s193396
authored
6 months ago
ab581084
added support for 3D in data preparation functions
· 070fc09a
s193396
authored
6 months ago
070fc09a
Merge branch 'main' of lab.compute.dtu.dk:QIM/tools/qim3d into 3D_UNet
· 93942fe3
s193396
authored
6 months ago
93942fe3
Feb 10, 2025
Merge remote-tracking branch 'refs/remotes/origin/main'
· 3e1468bd
fima
authored
6 months ago
3e1468bd
Hotfix: Torch dependency
· 9278a1ef
fima
authored
6 months ago
9278a1ef
Feb 04, 2025
draft for 3D UNet notebook
· e21f1d51
s193396
authored
6 months ago
e21f1d51
3D UNet implementatioN
· ae49d74c
s193396
authored
6 months ago
ae49d74c
more fixes to docs
· 7f406282
s193396
authored
6 months ago
7f406282
small documentation fix
· 6866dfcc
s193396
authored
6 months ago
6866dfcc
updated segmentation pipeline notebook
· 3c284b4a
s193396
authored
6 months ago
3c284b4a
updated notebook
· 968d7efe
s193396
authored
6 months ago
968d7efe
renaming existing unet to UNet2D
· b2a8a35c
s193396
authored
6 months ago
b2a8a35c
Merge branch 'notebook_unit_testing' into 'main'
· 15a48272
fima
authored
6 months ago
15a48272
Notebook unit testing
· 841bd675
s193396
authored
6 months ago
and
fima
committed
6 months ago
841bd675
Feb 03, 2025
Merge branch 'downloader_print' into 'main'
· 29bcad95
fima
authored
7 months ago
29bcad95
display downloadable files
· 790dfcf0
s214735
authored
7 months ago
and
fima
committed
7 months ago
790dfcf0
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